hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-14452979/chunk_1/iprscan-20080808-14452979.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eg01092 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02137.9.ls Adenosine-deaminase (editase) domain 772.7 2.1e-229 1 PF02137.9.fs Adenosine-deaminase (editase) domain 770.8 7.5e-229 1 PF02295.8.ls Adenosine deaminase z-alpha domain 244.2 2.5e-70 2 PF02295.8.fs Adenosine deaminase z-alpha domain 240.3 3.8e-69 2 PF00035.15.ls Double-stranded RNA binding motif 180.9 2.9e-51 3 PF00035.15.fs Double-stranded RNA binding motif 174.9 1.8e-49 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02295.8.ls 1/2 153 219 .. 1 67 [] 124.1 3.7e-34 PF02295.8.fs 1/2 153 219 .. 1 67 [] 122.1 1.5e-33 PF02295.8.fs 2/2 313 377 .. 1 67 [] 118.2 2.2e-32 PF02295.8.ls 2/2 313 377 .. 1 67 [] 120.1 5.7e-33 PF00035.15.fs 1/3 522 587 .. 1 67 [] 67.1 3.7e-18 PF00035.15.ls 1/3 522 587 .. 1 67 [] 69.0 1.4e-17 PF00035.15.fs 2/3 633 698 .. 1 67 [] 52.1 5.8e-14 PF00035.15.ls 2/3 633 698 .. 1 67 [] 54.1 4.2e-13 PF00035.15.ls 3/3 745 810 .. 1 67 [] 57.7 3.5e-14 PF00035.15.fs 3/3 745 810 .. 1 67 [] 55.7 5.7e-15 PF02137.9.fs 1/1 904 1235 .. 1 356 [] 770.8 7.5e-229 PF02137.9.ls 1/1 904 1235 .. 1 356 [] 772.7 2.1e-229 Alignments of top-scoring domains: PF02295.8.ls: domain 1 of 2, from 153 to 219: score 124.1, E = 3.7e-34 *->dmaeleekvLefLknigdgktataialarglskeKkeiNrvLYdLer +++++e+++L+fL+++g+gk++ta++l+++l+++KkeiNrvLY+L++ eg01092 153 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 199 kGevckedgtPPlWfltdkk<-* kG+++ke+gtPPlW++++++ eg01092 200 KGKLQKEAGTPPLWKIAVST 219 PF02295.8.fs: domain 1 of 2, from 153 to 219: score 122.1, E = 1.5e-33 *->dmaeleekvLefLknigdgktataialarglskeKkeiNrvLYdLer +++++e+++L+fL+++g+gk++ta++l+++l+++KkeiNrvLY+L++ eg01092 153 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 199 kGevckedgtPPlWfltdkk<-* kG+++ke+gtPPlW++++++ eg01092 200 KGKLQKEAGTPPLWKIAVST 219 PF02295.8.fs: domain 2 of 2, from 313 to 377: score 118.2, E = 2.2e-32 *->dmaeleekvLefLknigdgktataialarglskeKkeiNrvLYdLer dmae++ek++++L+n++ +++a+++a+++gl+k +++iN+vL+d+er eg01092 313 DMAEIKEKICDYLFNVS-DSSALNLAKNIGLTK-ARDINAVLIDMER 357 kGevckedgtPPlWfltdkk<-* +G+v+++++tPP+W+ltdkk eg01092 358 QGDVYRQGTTPPIWHLTDKK 377 PF02295.8.ls: domain 2 of 2, from 313 to 377: score 120.1, E = 5.7e-33 *->dmaeleekvLefLknigdgktataialarglskeKkeiNrvLYdLer dmae++ek++++L+n++ +++a+++a+++gl+k +++iN+vL+d+er eg01092 313 DMAEIKEKICDYLFNVS-DSSALNLAKNIGLTK-ARDINAVLIDMER 357 kGevckedgtPPlWfltdkk<-* +G+v+++++tPP+W+ltdkk eg01092 358 QGDVYRQGTTPPIWHLTDKK 377 PF00035.15.fs: domain 1 of 3, from 522 to 587: score 67.1, E = 3.7e-18 *->pkslLqEllcqkkgkkppyeyiee.gpphnpptFtvtvtvngkeygt p+s L E ++q ++ ++ ie++gpph+ p+F+ +v++ng+e+ eg01092 522 PISGLLE-YAQFASQTCEFNMIEQsGPPHE-PRFKFQVVINGREFPP 566 GkgssKKeAkqlAAekALrkL<-* +++ sKK Akq AA+kA +L eg01092 567 AEAGSKKVAKQDAAMKAMTIL 587 PF00035.15.ls: domain 1 of 3, from 522 to 587: score 69.0, E = 1.4e-17 *->pkslLqEllcqkkgkkppyeyiee.gpphnpptFtvtvtvngkeygt p+s L E ++q ++ ++ ie++gpph+ p+F+ +v++ng+e+ eg01092 522 PISGLLE-YAQFASQTCEFNMIEQsGPPHE-PRFKFQVVINGREFPP 566 GkgssKKeAkqlAAekALrkL<-* +++ sKK Akq AA+kA +L eg01092 567 AEAGSKKVAKQDAAMKAMTIL 587 PF00035.15.fs: domain 2 of 3, from 633 to 698: score 52.1, E = 5.8e-14 *->pkslLqEllcqkkgkkppyeyiee.gpphnpptFtvtvtvngkeygt p++ L E +++k g+ ++++++++gp+h+ p+F+ +v v+ +++ + eg01092 633 PVTTLLE-CMHKLGNSCEFRLLSKeGPAHE-PKFQYCVAVGAQTFPS 677 GkgssKKeAkqlAAekALrkL<-* ++sKK Akq AAe+A + L eg01092 678 VSAPSKKVAKQMAAEEAMKAL 698 PF00035.15.ls: domain 2 of 3, from 633 to 698: score 54.1, E = 4.2e-13 *->pkslLqEllcqkkgkkppyeyiee.gpphnpptFtvtvtvngkeygt p++ L E +++k g+ ++++++++gp+h+ p+F+ +v v+ +++ + eg01092 633 PVTTLLE-CMHKLGNSCEFRLLSKeGPAHE-PKFQYCVAVGAQTFPS 677 GkgssKKeAkqlAAekALrkL<-* ++sKK Akq AAe+A + L eg01092 678 VSAPSKKVAKQMAAEEAMKAL 698 PF00035.15.ls: domain 3 of 3, from 745 to 810: score 57.7, E = 3.5e-14 *->pkslLqEllcqkkgkkppyeyiee.gpphnpptFtvtvtvngkeygt p++ L E ++ +g+ +++++ ++gpph+ p+F+ +++v+g+ + + eg01092 745 PVGGLLE-YARSHGFAAEFKLVDQsGPPHE-PKFVYQAKVGGRWFPA 789 GkgssKKeAkqlAAekALrkL<-* + sKK+ kq AA +ALr L eg01092 790 VCAHSKKQGKQEAADAALRVL 810 PF00035.15.fs: domain 3 of 3, from 745 to 810: score 55.7, E = 5.7e-15 *->pkslLqEllcqkkgkkppyeyiee.gpphnpptFtvtvtvngkeygt p++ L E ++ +g+ +++++ ++gpph+ p+F+ +++v+g+ + + eg01092 745 PVGGLLE-YARSHGFAAEFKLVDQsGPPHE-PKFVYQAKVGGRWFPA 789 GkgssKKeAkqlAAekALrkL<-* + sKK+ kq AA +ALr L eg01092 790 VCAHSKKQGKQEAADAALRVL 810 PF02137.9.fs: domain 1 of 1, from 904 to 1235: score 770.8, E = 7.5e-229 *->algTGnkcvsGPDehislnGtvLnDcHAeIvARRglLrfLYsqLllf +lgTGn+cv+G +++sl+G+++nDcHAeI++RRg++rfLYs+L+++ eg01092 904 SLGTGNRCVKG--DSLSLKGETVNDCHAEIISRRGFIRFLYSELMKY 948 nsKnqatpedSIFekakeGkyalrLKpnvsFHLYiNtaPCGdAridskle ns +t++dSIFe+ak+G+ +l++K++vsFHLYi+taPCGd+++++k++ eg01092 949 NS---QTAKDSIFEPAKGGE-KLQIKKTVSFHLYISTAPCGDGALFDKSC 994 sdtssneetedkHiPvfrkaRQGkLRtkienGeGTvPvaVessdavqTwD sd+++ e+te++H+Pvf++++QGkLRtk+enGeGT+P Vessd+v+TwD eg01092 995 SDRAM-ESTESRHYPVFENPKQGKLRTKVENGEGTIP--VESSDIVPTWD 1041 GIllGeRLrTMSCSDKllRWNVLGvQGALLSHfIePvYlsSIlvGdesLn GI+lGeRLrTMSCSDK+lRWNVLG+QGALL+Hf++P+Yl+S+++G +L+ eg01092 1042 GIRLGERLRTMSCSDKILRWNVLGLQGALLTHFLQPIYLKSVTLG--YLF 1089 stehLtrAicgRverdGeAfiskLPapYhvNrPeiglVsvadpeRqtgka s++hLtrAic+Rv+rdG+Af+++L++p++vN+P++g+Vs++d++Rq+gk+ eg01092 1090 SQGHLTRAICCRVTRDGSAFEDGLRHPFIVNHPKVGRVSIYDSKRQSGKT 1139 khltisSvNWalGDgyslEvvdgttGkvsggsleksdlstpSRlCKaamf k++ SvNW+l+Dgy+lE++dgt+G+v+g+++e +SR++K+++f eg01092 1140 KET---SVNWCLADGYDLEILDGTRGTVDGPRNE------LSRVSKKNIF 1180 elfrkLcgeLrtrvdlevltdsmYgeaKamaseYQtAKkqffkaLqqaGL lf+kLc+ +r+r+dl++l+ YgeaK++a++Y+tAK++f+k+L+++G+ eg01092 1181 LLFKKLCS-FRYRRDLLRLS---YGEAKKAARDYETAKNYFKKGLKDMGY 1226 GsWirKPpE<-* G+Wi+KP+E eg01092 1227 GNWISKPQE 1235 PF02137.9.ls: domain 1 of 1, from 904 to 1235: score 772.7, E = 2.1e-229 *->algTGnkcvsGPDehislnGtvLnDcHAeIvARRglLrfLYsqLllf +lgTGn+cv+G +++sl+G+++nDcHAeI++RRg++rfLYs+L+++ eg01092 904 SLGTGNRCVKG--DSLSLKGETVNDCHAEIISRRGFIRFLYSELMKY 948 nsKnqatpedSIFekakeGkyalrLKpnvsFHLYiNtaPCGdAridskle ns +t++dSIFe+ak+G+ +l++K++vsFHLYi+taPCGd+++++k++ eg01092 949 NS---QTAKDSIFEPAKGGE-KLQIKKTVSFHLYISTAPCGDGALFDKSC 994 sdtssneetedkHiPvfrkaRQGkLRtkienGeGTvPvaVessdavqTwD sd+++ e+te++H+Pvf++++QGkLRtk+enGeGT+P Vessd+v+TwD eg01092 995 SDRAM-ESTESRHYPVFENPKQGKLRTKVENGEGTIP--VESSDIVPTWD 1041 GIllGeRLrTMSCSDKllRWNVLGvQGALLSHfIePvYlsSIlvGdesLn GI+lGeRLrTMSCSDK+lRWNVLG+QGALL+Hf++P+Yl+S+++G +L+ eg01092 1042 GIRLGERLRTMSCSDKILRWNVLGLQGALLTHFLQPIYLKSVTLG--YLF 1089 stehLtrAicgRverdGeAfiskLPapYhvNrPeiglVsvadpeRqtgka s++hLtrAic+Rv+rdG+Af+++L++p++vN+P++g+Vs++d++Rq+gk+ eg01092 1090 SQGHLTRAICCRVTRDGSAFEDGLRHPFIVNHPKVGRVSIYDSKRQSGKT 1139 khltisSvNWalGDgyslEvvdgttGkvsggsleksdlstpSRlCKaamf k++ SvNW+l+Dgy+lE++dgt+G+v+g+++e +SR++K+++f eg01092 1140 KET---SVNWCLADGYDLEILDGTRGTVDGPRNE------LSRVSKKNIF 1180 elfrkLcgeLrtrvdlevltdsmYgeaKamaseYQtAKkqffkaLqqaGL lf+kLc+ +r+r+dl++l+ YgeaK++a++Y+tAK++f+k+L+++G+ eg01092 1181 LLFKKLCS-FRYRRDLLRLS---YGEAKKAARDYETAKNYFKKGLKDMGY 1226 GsWirKPpE<-* G+Wi+KP+E eg01092 1227 GNWISKPQE 1235 //