hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-14575918/chunk_1/iprscan-20080808-14575918.nocrc
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Query sequence: eg01275
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
SM00111                                                 463.7     9e-135   2

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
SM00111           1/2    1502  1609 ..     1   116 []   210.5  1.5e-58
SM00111           2/2    1610  1724 ..     1   116 []   253.2  2.1e-71

Alignments of top-scoring domains:
SM00111: domain 1 of 2, from 1502 to 1609: score 210.5, E = 1.5e-58
                   *->gfviAvHSQttnvPqCPaGweeLWtGYSflmhtgangeGvGQdLgsp
                      g ++++HSQt + P CP G+++LW+GYS+l+ +g ++++++QdLg +
     eg01275  1502    GYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEG-QEKAHNQDLGLA 1547 

                   GSCLerFrtmPFieCngrgvCnYasRndySFWLstieesdqFraPrpmtp
                   GSCL rF+tmPF+ Cn+ +vC YasRnd+S+WLst+       aP pm+p
     eg01275  1548 GSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTT-------APLPMMP 1590 

                   kaGrdlesyiSRCqVCekp<-*
                   +a+ ++++yiSRC+VCe+p   
     eg01275  1591 VAEDEIKPYISRCSVCEAP    1609 

SM00111: domain 2 of 2, from 1610 to 1724: score 253.2, E = 2.1e-71
                   *->gfviAvHSQttnvPqCPaGweeLWtGYSflmhtgangeGvGQdLgsp
                      ++ iAvHSQ++++P CPaGw++LW+GYSflmht+a++eG+GQ+L sp
     eg01275  1610    AIAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSP 1656 

                   GSCLerFrtmPFieCng.rgvCnYasRndySFWLstieesdqFr.aPrpm
                   GSCLe+Fr++PFieCng+rg+C+Y++ n ySFWL+ti +++ F++ P   
     eg01275  1657 GSCLEDFRATPFIECNGgRGTCHYYA-NKYSFWLTTI-PEQSFQgSPSAD 1704 

                   tpkaGrdlesyiSRCqVCekp<-*
                   t+kaG  ++++iSRCqVC+k+   
     eg01275  1705 TLKAG-LIRTHISRCQVCMKN    1724 

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