hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-15045768/chunk_1/iprscan-20080808-15045768.nocrc
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Query sequence: eg01310
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         224.0      3e-64   7
PF00096.16.fs Zinc finger, C2H2 type                         210.3    4.2e-60   7
PF01352.17.fs KRAB box                                        91.0    3.1e-25   1
PF01352.17.ls KRAB box                                        93.0    8.2e-25   1
PF01096.9.fs Transcription factor S-II (TFIIS)               26.4    1.8e-07   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01352.17.fs   1/1      13    53 ..     1    41 []    91.0  3.1e-25
PF01352.17.ls   1/1      13    53 ..     1    41 []    93.0  8.2e-25
PF00096.16.ls   1/7     216   238 ..     1    24 []    18.5    0.023
PF00096.16.ls   2/7     244   266 ..     1    24 []    34.6  3.3e-07
PF00096.16.fs   2/7     244   266 ..     1    24 []    32.6  7.2e-07
PF00096.16.ls   3/7     272   294 ..     1    24 []    33.3    8e-07
PF00096.16.fs   3/7     272   294 ..     1    24 []    31.3  1.5e-06
PF00096.16.ls   4/7     300   322 ..     1    24 []    35.0  2.3e-07
PF00096.16.fs   4/7     300   322 ..     1    24 []    33.1  5.4e-07
PF00096.16.ls   5/7     328   350 ..     1    24 []    33.5  6.9e-07
PF00096.16.fs   5/7     328   350 ..     1    24 []    31.5  1.3e-06
PF00096.16.ls   6/7     356   378 ..     1    24 []    34.5  3.5e-07
PF00096.16.fs   6/7     356   378 ..     1    24 []    32.5  7.6e-07
PF00096.16.ls   7/7     384   406 ..     1    24 []    34.8  2.9e-07
PF00096.16.fs   7/7     384   406 ..     1    24 []    32.8  6.4e-07

Alignments of top-scoring domains:
PF01352.17.fs: domain 1 of 1, from 13 to 53: score 91.0, E = 3.1e-25
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                      +tFeDVaV+F+q EW++L+paQ++LYr+VMlEN++nL+ lg   
     eg01310    13    MTFEDVAVEFSQWEWGQLNPAQKDLYREVMLENFRNLAILG    53   

PF01352.17.ls: domain 1 of 1, from 13 to 53: score 93.0, E = 8.2e-25
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                      +tFeDVaV+F+q EW++L+paQ++LYr+VMlEN++nL+ lg   
     eg01310    13    MTFEDVAVEFSQWEWGQLNPAQKDLYREVMLENFRNLAILG    53   

PF00096.16.ls: domain 1 of 7, from 216 to 238: score 18.5, E = 0.023
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +CgksF  +s+L+rH+r H   
     eg01310   216    CKCN-ECGKSFHFQSELRRHQRCH    238  

PF00096.16.ls: domain 2 of 7, from 244 to 266: score 34.6, E = 3.3e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ dCg++F + s+L +H+rtH   
     eg01310   244    YECS-DCGRAFGHISSLIKHQRTH    266  

PF00096.16.fs: domain 2 of 7, from 244 to 266: score 32.6, E = 7.2e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ dCg++F + s+L +H+rtH   
     eg01310   244    YECS-DCGRAFGHISSLIKHQRTH    266  

PF00096.16.ls: domain 3 of 7, from 272 to 294: score 33.3, E = 8e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg++Fs++s+L  H r H   
     eg01310   272    YECS-ECGRAFSQSSSLVLHYRFH    294  

PF00096.16.fs: domain 3 of 7, from 272 to 294: score 31.3, E = 1.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg++Fs++s+L  H r H   
     eg01310   272    YECS-ECGRAFSQSSSLVLHYRFH    294  

PF00096.16.ls: domain 4 of 7, from 300 to 322: score 35.0, E = 2.3e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg++F + s+L +H+rtH   
     eg01310   300    YKCN-ECGRAFGHTSSLIKHQRTH    322  

PF00096.16.fs: domain 4 of 7, from 300 to 322: score 33.1, E = 5.4e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg++F + s+L +H+rtH   
     eg01310   300    YKCN-ECGRAFGHTSSLIKHQRTH    322  

PF00096.16.ls: domain 5 of 7, from 328 to 350: score 33.5, E = 6.9e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +Cg++Fs++s+L  H r H   
     eg01310   328    YECR-ECGRTFSQSSSLIVHYRFH    350  

PF00096.16.fs: domain 5 of 7, from 328 to 350: score 31.5, E = 1.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +Cg++Fs++s+L  H r H   
     eg01310   328    YECR-ECGRTFSQSSSLIVHYRFH    350  

PF00096.16.ls: domain 6 of 7, from 356 to 378: score 34.5, E = 3.5e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg++Fs++s+L++H r H   
     eg01310   356    YKCN-KCGRAFSQSSSLTQHYRFH    378  

PF00096.16.fs: domain 6 of 7, from 356 to 378: score 32.5, E = 7.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg++Fs++s+L++H r H   
     eg01310   356    YKCN-KCGRAFSQSSSLTQHYRFH    378  

PF00096.16.ls: domain 7 of 7, from 384 to 406: score 34.8, E = 2.9e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg++F + ++L +H+r+H   
     eg01310   384    YKCN-ECGRAFAHTASLIKHQRSH    406  

PF00096.16.fs: domain 7 of 7, from 384 to 406: score 32.8, E = 6.4e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg++F + ++L +H+r+H   
     eg01310   384    YKCN-ECGRAFAHTASLIKHQRSH    406  

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