hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-15113659/chunk_1/iprscan-20080808-15113659.nocrc
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Query sequence: eg01353
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF04704.3.ls Zfx / Zfy transcription activation region   867.5   6.1e-258   1
PF04704.3.fs Zfx / Zfy transcription activation region   861.8     3e-256   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF04704.3.fs   1/2      73   154 ..     1    91 [.   170.8  1.4e-50
PF04704.3.ls   1/1      73   414 ..     1   361 []   867.5 6.1e-258
PF04704.3.fs   2/2     155   414 ..    86   361 .]   691.1 7.7e-205

Alignments of top-scoring domains:
PF04704.3.fs: domain 1 of 2, from 73 to 154: score 170.8, E = 1.4e-50
                   *->EdvviEdVhCpDIleEtDvVSEgVIIPEqVLeadVGtaiEEdleEEd
                      EdvviEdV+CpDI+eE+D VSE+VIIPEqVL++dV        +EE+
     eg01353    73    EDVVIEDVQCPDIMEEAD-VSETVIIPEQVLDSDV--------TEEV 110  

                   SLaqclvPDdiLtSeltsesltvPEhvlvsesvHvsdvGHvEhV<-*
                   SLa+c+vPDd+L+S++ts+s+++PEhvl+ +s+HvsdvGHv hV   
     eg01353   111 SLAHCTVPDDVLASDITSASMSMPEHVLTGDSIHVSDVGHVGHV    154  

PF04704.3.ls: domain 1 of 1, from 73 to 414: score 867.5, E = 6.1e-258
                   *->EdvviEdVhCpDIleEtDvVSEgVIIPEqVLeadVGtaiEEdleEEd
                      EdvviEdV+CpDI+eE+D VSE+VIIPEqVL++dV        +EE+
     eg01353    73    EDVVIEDVQCPDIMEEAD-VSETVIIPEQVLDSDV--------TEEV 110  

                   SLaqclvPDdiLtSeltsesltvPEhvlvsesvHvsd......vGHvEhV
                   SLa+c+vPDd+L+S++ts+s+++PEhvl+ +s+Hvsd ++ ++vGHvEhV
     eg01353   111 SLAHCTVPDDVLASDITSASMSMPEHVLTGDSIHVSDvghvghVGHVEHV 160  

                   vhDsVvgeEivddPltaDmvSeEVLVADCvSEAVIdAnGGvPGstvtIpv
                   vhDsVv++Eiv+dPlt D+vSeEVLVADC+SEAVIdAnG        Ipv
     eg01353   161 VHDSVVEAEIVTDPLTTDVVSEEVLVADCASEAVIDANG--------IPV 202  

                   eqqDdDkvnstCEDYLMISLDDaGeKiehdGsseltmgseseqDssKlDG
                   +qqDdDk+n  CEDYLMISLDDa +KiehdGss++tm+ ese+D++K+DG
     eg01353   203 DQQDDDKGN--CEDYLMISLDDA-GKIEHDGSSGMTMDTESEIDPCKVDG 249  

                   acpEVIKVYIFKADpeeDvDlGGTvdivESEsenghgvagvLDqsnsiRv
                   +cpEVIKVYIFKADp+eD DlGGTvdivESE+en+hgv ++LDq+ siRv
     eg01353   250 TCPEVIKVYIFKADPGED-DLGGTVDIVESEPENDHGV-ELLDQNSSIRV 297  

                   pRekMVYMtVnDSqqEedDlsvAEIADEVYMEVIVGEEDAtslaadlPeh
                   pRekMVYMtVnDSq E++Dl+vAEIADEVYMEVIVGEEDA+  aa    h
     eg01353   298 PREKMVYMTVNDSQPEDEDLNVAEIADEVYMEVIVGEEDAAAAAAAAAVH 347  

                   eqQledsEinKTafmPvaWAAAYGNnlDsgiEsRngTASalLhiDESiGl
                   eqQ++d+Ei KT fmP+aWAAAYGNn+D giE+RngTASalLhiDES+Gl
     eg01353   348 EQQMDDNEI-KT-FMPIAWAAAYGNNSD-GIENRNGTASALLHIDESAGL 394  

                   drvlKQKaKKrRRgEsRQYq<-*
                   +r++KQK+KKrRR++sRQYq   
     eg01353   395 GRLAKQKPKKRRRPDSRQYQ    414  

PF04704.3.fs: domain 2 of 2, from 155 to 414: score 691.1, E = 7.7e-205
                   *->GHvEhVvhDsVvgeEivddPltaDmvSeEVLVADCvSEAVIdAnGGv
                      GHvEhVvhDsVv++Eiv+dPlt D+vSeEVLVADC+SEAVIdAnG  
     eg01353   155    GHVEHVVHDSVVEAEIVTDPLTTDVVSEEVLVADCASEAVIDANG-- 199  

                   PGstvtIpveqqDdDkvnstCEDYLMISLDDaGeKiehdGsseltmgses
                         Ipv+qqDdDk+n  CEDYLMISLDDa +KiehdGss++tm+ es
     eg01353   200 ------IPVDQQDDDKGN--CEDYLMISLDDA-GKIEHDGSSGMTMDTES 240  

                   eqDssKlDGacpEVIKVYIFKADpeeDvDlGGTvdivESEsenghgvagv
                   e+D++K+DG+cpEVIKVYIFKADp+eD DlGGTvdivESE+en+hgv ++
     eg01353   241 EIDPCKVDGTCPEVIKVYIFKADPGED-DLGGTVDIVESEPENDHGV-EL 288  

                   LDqsnsiRvpRekMVYMtVnDSqqEedDlsvAEIADEVYMEVIVGEEDAt
                   LDq+ siRvpRekMVYMtVnDSq E++Dl+vAEIADEVYMEVIVGEEDA+
     eg01353   289 LDQNSSIRVPREKMVYMTVNDSQPEDEDLNVAEIADEVYMEVIVGEEDAA 338  

                   slaadlPeheqQledsEinKTafmPvaWAAAYGNnlDsgiEsRngTASal
                     aa    heqQ++d+Ei KT fmP+aWAAAYGNn+D giE+RngTASal
     eg01353   339 AAAAAAAVHEQQMDDNEI-KT-FMPIAWAAAYGNNSD-GIENRNGTASAL 385  

                   LhiDESiGldrvlKQKaKKrRRgEsRQYq<-*
                   LhiDES+Gl+r++KQK+KKrRR++sRQYq   
     eg01353   386 LHIDESAGLGRLAKQKPKKRRRPDSRQYQ    414  

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