hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-15173291/chunk_1/iprscan-20080808-15173291.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eg01636 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08441.2.fs Integrin alpha 641.5 2.5e-194 1 PF08441.2.ls Integrin alpha 643.3 1.8e-190 1 PF01839.13.ls FG-GAP repeat 105.2 1.8e-28 4 PF01839.13.fs FG-GAP repeat 97.6 1.3e-27 4 PF00357.10.fs Integrin alpha cytoplasmic region 23.7 4.3e-07 1 PF00357.10.ls Integrin alpha cytoplasmic region 25.7 0.00015 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01839.13.fs 1/4 302 336 .. 1 36 [] 28.5 2e-07 PF01839.13.ls 1/4 302 336 .. 1 36 [] 30.4 5.8e-06 PF01839.13.ls 2/4 356 398 .. 1 36 [] 25.5 0.00018 PF01839.13.fs 2/4 356 398 .. 1 36 [] 23.4 6.1e-06 PF01839.13.ls 3/4 420 456 .. 1 36 [] 27.6 4.1e-05 PF01839.13.fs 3/4 420 456 .. 1 36 [] 25.6 1.4e-06 PF08441.2.fs 1/1 517 964 .. 1 483 [] 641.5 2.5e-194 PF08441.2.ls 1/1 517 964 .. 1 483 [] 643.3 1.8e-190 PF00357.10.fs 1/1 1067 1081 .. 1 15 [] 23.7 4.3e-07 PF00357.10.ls 1/1 1067 1081 .. 1 15 [] 25.7 0.00015 Alignments of top-scoring domains: PF01839.13.fs: domain 1 of 4, from 302 to 336: score 28.5, E = 2e-07 *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-* g+sva+gD+nGDG++D+v g+P ++ + g vy++ eg01636 302 LGYSVAVGDFNGDGIDDFVSGVP----RAaRtlGMVYIY 336 PF01839.13.ls: domain 1 of 4, from 302 to 336: score 30.4, E = 5.8e-06 *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-* g+sva+gD+nGDG++D+v g+P ++ + g vy++ eg01636 302 LGYSVAVGDFNGDGIDDFVSGVP----RAaRtlGMVYIY 336 PF01839.13.ls: domain 2 of 4, from 356 to 398: score 25.5, E = 0.00018 *->fgssvaagDlnGDGrpDlvvgaPgad....ggt.d..gsvyll<-* fg svaa+D+nGD ++D+ +gaP + +++++g ++ g+v++ eg01636 356 FGFSVAATDINGDDYADVFIGAPLFMdrgsDGKlQevGQVSVS 398 PF01839.13.fs: domain 2 of 4, from 356 to 398: score 23.4, E = 6.1e-06 *->fgssvaagDlnGDGrpDlvvgaPgad....ggt.d..gsvyll<-* fg svaa+D+nGD ++D+ +gaP + +++++g ++ g+v++ eg01636 356 FGFSVAATDINGDDYADVFIGAPLFMdrgsDGKlQevGQVSVS 398 PF01839.13.ls: domain 3 of 4, from 420 to 456: score 27.6, E = 4.1e-05 *->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-* fgs++a+ +Dl+ DG++D++++aP ++g ++ g vy++ eg01636 420 FGSAIAPLgDLDQDGFNDIAIAAP-YGGEDkKGIVYIF 456 PF01839.13.fs: domain 3 of 4, from 420 to 456: score 25.6, E = 1.4e-06 *->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-* fgs++a+ +Dl+ DG++D++++aP ++g ++ g vy++ eg01636 420 FGSAIAPLgDLDQDGFNDIAIAAP-YGGEDkKGIVYIF 456 PF08441.2.fs: domain 1 of 1, from 517 to 964: score 641.5, E = 2.5e-194 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg +RPV++v+a l+++P+++n ++k+C+lpg+ +vsCfnv++C++++g eg01636 517 ARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADG 563 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetksstltrnlvlg k v p++++++++L LD+ +k+k++i+RalFl ++s+++++n+++ eg01636 564 KGVL---PRKLNFQVELLLDK-LKQKGAIRRALFL-YSRSPSHSKNMTIS 608 nqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlpg ++g ++Ce++++yLrdEs++rDkl+PI+i ++y L d+r +ad++g eg01636 609 RGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL-----DYRTAADTTG 653 llqPvLnqysptsitfqipFeKnCGeDniCvaDLqLsvsfslregtptLv l qP+Lnq +p+ i+ q++++++CGeDn+C + L +sv + +++++ eg01636 654 L-QPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSVDSD----QKKIY 698 vGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverlqnpesekp +Gd+++LtL+++++N+ GE+AYea+L+v++P ++f++v+r n+e + eg01636 699 IGDDNPLTLIVKAQNQ-GEGAYEAELIVSIPLQADFIGVVR--NNEALAR 745 lsCesnkengtrsvtCdlGnPimkagsqvtftitFdvsslsglgdslefd lsC++++en+tr+v+CdlGnP mkag+q+ ++++F+v++ s++++s++fd eg01636 746 LSCAFKTENQTRQVVCDLGNP-MKAGTQLLAGLRFSVHQQSEMDTSVKFD 794 lqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvffngsnwe lq++S+N + +++v+ ++ + + a ++i+Gvs+p+++f+++ nwe eg01636 795 LQIQSSNLF---DKVSPVVSHKVDLAVLAAVEIRGVSSPDHIFLPIPNWE 841 gesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqwPyelasds +++pe+eedvG p+v+h+Ye+rN+Gps ++++a l++qwPy+ + eg01636 842 HKENPETEEDVG---PVVQHIYELRNNGPS-SFSKAMLHLQWPYK----Y 883 ngkvpllYllevqtgsksegnvsCspqnlninplnldlsssgttprleal n++ +llY+l++ + +g+++C+++++ inpl +++ss +tt+++ ++ eg01636 884 NNN-TLLYILHYDI----DGPMNCTSDME-INPLRIKISSLQTTEKNDTV 927 lrnsrerqeigesev...aqsykvLdCsssnasClrirC<-* + ++++ i++++ ++++ +L C + a+Cl i C eg01636 928 AGQGERDHLITKRDLalsEGDIHTLGC--GVAQCLKIVC 964 PF08441.2.ls: domain 1 of 1, from 517 to 964: score 643.3, E = 1.8e-190 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg +RPV++v+a l+++P+++n ++k+C+lpg+ +vsCfnv++C++++g eg01636 517 ARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADG 563 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetksstltrnlvlg k v p++++++++L LD+ +k+k++i+RalFl ++s+++++n+++ eg01636 564 KGVL---PRKLNFQVELLLDK-LKQKGAIRRALFL-YSRSPSHSKNMTIS 608 nqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlpg ++g ++Ce++++yLrdEs++rDkl+PI+i ++y L d+r +ad++g eg01636 609 RGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL-----DYRTAADTTG 653 llqPvLnqysptsitfqipFeKnCGeDniCvaDLqLsvsfslregtptLv l qP+Lnq +p+ i+ q++++++CGeDn+C + L +sv + +++++ eg01636 654 L-QPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSVDSD----QKKIY 698 vGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverlqnpesekp +Gd+++LtL+++++N+ GE+AYea+L+v++P ++f++v+r n+e + eg01636 699 IGDDNPLTLIVKAQNQ-GEGAYEAELIVSIPLQADFIGVVR--NNEALAR 745 lsCesnkengtrsvtCdlGnPimkagsqvtftitFdvsslsglgdslefd lsC++++en+tr+v+CdlGnP mkag+q+ ++++F+v++ s++++s++fd eg01636 746 LSCAFKTENQTRQVVCDLGNP-MKAGTQLLAGLRFSVHQQSEMDTSVKFD 794 lqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvffngsnwe lq++S+N + +++v+ ++ + + a ++i+Gvs+p+++f+++ nwe eg01636 795 LQIQSSNLF---DKVSPVVSHKVDLAVLAAVEIRGVSSPDHIFLPIPNWE 841 gesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqwPyelasds +++pe+eedvG p+v+h+Ye+rN+Gps ++++a l++qwPy+ + eg01636 842 HKENPETEEDVG---PVVQHIYELRNNGPS-SFSKAMLHLQWPYK----Y 883 ngkvpllYllevqtgsksegnvsCspqnlninplnldlsssgttprleal n++ +llY+l++ + +g+++C+++++ inpl +++ss +tt+++ ++ eg01636 884 NNN-TLLYILHYDI----DGPMNCTSDME-INPLRIKISSLQTTEKNDTV 927 lrnsrerqeigesev...aqsykvLdCsssnasClrirC<-* + ++++ i++++ ++++ +L C + a+Cl i C eg01636 928 AGQGERDHLITKRDLalsEGDIHTLGC--GVAQCLKIVC 964 PF00357.10.fs: domain 1 of 1, from 1067 to 1081: score 23.7, E = 4.3e-07 *->KcGFFKRkykpqeee<-* ++GFFKR ++pqee+ eg01636 1067 RMGFFKRVRPPQEEQ 1081 PF00357.10.ls: domain 1 of 1, from 1067 to 1081: score 25.7, E = 0.00015 *->KcGFFKRkykpqeee<-* ++GFFKR ++pqee+ eg01636 1067 RMGFFKRVRPPQEEQ 1081 //