# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oeg01788.fasta.nr -Q eg01788.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 eg01788, 134 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6822420 sequences Expectation_n fit: rho(ln(x))= 4.7216+/-0.00018; mu= 8.4623+/- 0.010 mean_var=64.9130+/-12.432, 0's: 41 Z-trim: 69 B-trim: 0 in 0/66 Lambda= 0.159187 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089378|dbj|BAD93133.1| CSDA protein variant [ ( 134) 891 212.3 1.5e-53 gi|16198465|gb|AAH15913.1| CSDA protein [Homo sapi ( 303) 817 195.6 3.6e-48 gi|97536050|sp|P16989|DBPA_HUMAN DNA-binding prote ( 372) 817 195.7 4.1e-48 gi|114643494|ref|XP_520744.2| PREDICTED: similar t ( 588) 817 195.9 5.9e-48 gi|950340|gb|AAA79243.1| DNA-binding protein A ( 342) 812 194.5 8.6e-48 gi|14250672|gb|AAH08801.1| Cold shock domain prote ( 372) 812 194.6 9.2e-48 gi|109095654|ref|XP_001118505.1| PREDICTED: simila ( 407) 812 194.6 9.8e-48 gi|181484|gb|AAA35749.1| DNA-binding protein A ( 412) 812 194.6 9.9e-48 gi|14602477|gb|AAH09744.1| CSDA protein [Homo sapi ( 303) 808 193.6 1.5e-47 gi|146186540|gb|AAI40645.1| CSDA protein [Bos taur ( 376) 781 187.4 1.3e-45 gi|6166111|sp|Q62764|DBPA_RAT DNA-binding protein ( 361) 775 186.1 3.2e-45 gi|10185725|gb|AAG14419.1|AF248547_1 Y-box protein ( 292) 770 184.8 6.1e-45 gi|148688939|gb|EDL20886.1| cold shock domain prot ( 292) 770 184.8 6.1e-45 gi|51494815|gb|AAH27785.1| Csda protein [Mus muscu ( 299) 770 184.8 6.3e-45 gi|1160331|dbj|BAA03376.1| dbpA murine homologue [ ( 308) 770 184.8 6.4e-45 gi|10185723|gb|AAG14418.1|AF248546_1 Y-box protein ( 361) 770 184.9 7.2e-45 gi|7385223|gb|AAF61741.1| RNA binding protein MSY4 ( 361) 770 184.9 7.2e-45 gi|61212920|sp|Q9JKB3|DBPA_MOUSE DNA-binding prote ( 361) 770 184.9 7.2e-45 gi|8100510|gb|AAF72335.1|AF171061_1 Y-box protein ( 304) 769 184.6 7.4e-45 gi|148688938|gb|EDL20885.1| cold shock domain prot ( 405) 770 184.9 7.9e-45 gi|8100512|gb|AAF72336.1|AF171062_1 Y-box protein ( 372) 769 184.7 8.6e-45 gi|532211|gb|AAC34193.1| Y-box binding protein [Mu ( 274) 745 179.1 3.1e-43 gi|2502064|gb|AAB80761.1| Y-box binding protein A ( 278) 744 178.8 3.7e-43 gi|26344984|dbj|BAC36141.1| unnamed protein produc ( 361) 740 178.0 8.5e-43 gi|149610695|ref|XP_001517390.1| PREDICTED: hypoth ( 223) 723 173.9 8.9e-42 gi|505133|dbj|BAA05907.1| RYB-a [Rattus norvegicus ( 291) 723 174.0 1.1e-41 gi|1083796|pir||S48055 RYB-a protein - rat ( 291) 723 174.0 1.1e-41 gi|194211706|ref|XP_001495854.2| PREDICTED: simila ( 332) 716 172.5 3.7e-41 gi|727428|gb|AAA64706.1| Rous sarcoma virus transc ( 298) 701 169.0 3.7e-40 gi|126340161|ref|XP_001372013.1| PREDICTED: simila ( 320) 700 168.8 4.5e-40 gi|59861901|gb|AAH90361.1| Cold shock domain prote ( 248) 698 168.2 5.2e-40 gi|465508|sp|Q06066.1|YBOX1_CHICK Nuclease-sensiti ( 321) 675 163.0 2.4e-38 gi|516701|dbj|BAA05380.1| unnamed protein product ( 326) 675 163.0 2.5e-38 gi|457262|gb|AAA36569.1| nuclease sensitive elemen ( 322) 669 161.7 6.3e-38 gi|27370848|gb|AAH41191.1| Ybx1 protein [Xenopus l ( 303) 666 161.0 9.8e-38 gi|140245|sp|P21573.1|YBOX1_XENLA Nuclease-sensiti ( 303) 666 161.0 9.8e-38 gi|27503841|gb|AAH42217.1| Nsep1 protein [Xenopus ( 304) 666 161.0 9.8e-38 gi|33875177|gb|AAH00064.1| YBX1 protein [Homo sapi ( 266) 664 160.4 1.2e-37 gi|116283293|gb|AAH18393.1| YBX1 protein [Homo sap ( 267) 664 160.5 1.2e-37 gi|2745892|gb|AAB94768.1| Y box transcription fact ( 299) 664 160.5 1.3e-37 gi|29437175|gb|AAH49977.1| Y box protein 1 [Mus mu ( 322) 664 160.5 1.4e-37 gi|988281|gb|AAA75475.1| mYB-1a ( 322) 664 160.5 1.4e-37 gi|203398|gb|AAA40906.1| putative ( 322) 664 160.5 1.4e-37 gi|51704186|sp|P62961.3|YBOX1_RAT Nuclease-sensiti ( 322) 664 160.5 1.4e-37 gi|9653686|gb|AAB46889.2| TSH receptor suppressor ( 322) 664 160.5 1.4e-37 gi|199821|gb|AAA63390.1| Y box transcription facto ( 322) 664 160.5 1.4e-37 gi|988283|gb|AAA75476.1| mYB-1b ( 322) 664 160.5 1.4e-37 gi|203999|gb|AAA41108.1| enhancer factor-1-alpha ( 322) 664 160.5 1.4e-37 gi|54040030|sp|P67808.3|YBOX1_BOVIN Nuclease-sensi ( 324) 664 160.5 1.4e-37 gi|75069491|sp|Q28618.3|YBOX1_RABIT Nuclease-sensi ( 324) 664 160.5 1.4e-37 >>gi|62089378|dbj|BAD93133.1| CSDA protein variant [Homo (134 aa) initn: 891 init1: 891 opt: 891 Z-score: 1116.7 bits: 212.3 E(): 1.5e-53 Smith-Waterman score: 891; 100.000% identity (100.000% similar) in 134 aa overlap (1-134:1-134) 10 20 30 40 50 60 eg0178 AAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNN 10 20 30 40 50 60 70 80 90 100 110 120 eg0178 PRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRG 70 80 90 100 110 120 130 eg0178 PPRNVRCLCYLTSD :::::::::::::: gi|620 PPRNVRCLCYLTSD 130 >>gi|16198465|gb|AAH15913.1| CSDA protein [Homo sapiens] (303 aa) initn: 817 init1: 817 opt: 817 Z-score: 1020.1 bits: 195.6 E(): 3.6e-48 Smith-Waterman score: 817; 100.000% identity (100.000% similar) in 124 aa overlap (1-124:68-191) 10 20 30 eg0178 AAAASLATAAGSEDAEKKVLATKVLGTVKW :::::::::::::::::::::::::::::: gi|161 SGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKW 40 50 60 70 80 90 40 50 60 70 80 90 eg0178 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|161 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 100 110 120 130 140 150 100 110 120 130 eg0178 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNVRCLCYLTSD :::::::::::::::::::::::::::::::::: gi|161 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPT 160 170 180 190 200 210 gi|161 YRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPS 220 230 240 250 260 270 >>gi|97536050|sp|P16989|DBPA_HUMAN DNA-binding protein A (372 aa) initn: 857 init1: 817 opt: 817 Z-score: 1018.9 bits: 195.7 E(): 4.1e-48 Smith-Waterman score: 817; 100.000% identity (100.000% similar) in 124 aa overlap (1-124:68-191) 10 20 30 eg0178 AAAASLATAAGSEDAEKKVLATKVLGTVKW :::::::::::::::::::::::::::::: gi|975 SGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKW 40 50 60 70 80 90 40 50 60 70 80 90 eg0178 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|975 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 100 110 120 130 140 150 100 110 120 130 eg0178 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNVRCLCYLTSD :::::::::::::::::::::::::::::::::: gi|975 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFS 160 170 180 190 200 210 gi|975 GARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQL 220 230 240 250 260 270 >>gi|114643494|ref|XP_520744.2| PREDICTED: similar to DN (588 aa) initn: 857 init1: 817 opt: 817 Z-score: 1016.2 bits: 195.9 E(): 5.9e-48 Smith-Waterman score: 817; 100.000% identity (100.000% similar) in 124 aa overlap (1-124:287-410) 10 20 30 eg0178 AAAASLATAAGSEDAEKKVLATKVLGTVKW :::::::::::::::::::::::::::::: gi|114 SGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKW 260 270 280 290 300 310 40 50 60 70 80 90 eg0178 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 320 330 340 350 360 370 100 110 120 130 eg0178 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNVRCLCYLTSD :::::::::::::::::::::::::::::::::: gi|114 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFS 380 390 400 410 420 430 gi|114 GARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQL 440 450 460 470 480 490 >>gi|950340|gb|AAA79243.1| DNA-binding protein A (342 aa) initn: 852 init1: 812 opt: 812 Z-score: 1013.1 bits: 194.5 E(): 8.6e-48 Smith-Waterman score: 812; 99.194% identity (100.000% similar) in 124 aa overlap (1-124:68-191) 10 20 30 eg0178 AAAASLATAAGSEDAEKKVLATKVLGTVKW :::::::.:::::::::::::::::::::: gi|950 SGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKW 40 50 60 70 80 90 40 50 60 70 80 90 eg0178 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|950 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 100 110 120 130 140 150 100 110 120 130 eg0178 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNVRCLCYLTSD :::::::::::::::::::::::::::::::::: gi|950 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFS 160 170 180 190 200 210 gi|950 GARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQL 220 230 240 250 260 270 >>gi|14250672|gb|AAH08801.1| Cold shock domain protein A (372 aa) initn: 852 init1: 812 opt: 812 Z-score: 1012.6 bits: 194.6 E(): 9.2e-48 Smith-Waterman score: 812; 99.194% identity (100.000% similar) in 124 aa overlap (1-124:68-191) 10 20 30 eg0178 AAAASLATAAGSEDAEKKVLATKVLGTVKW :::::::.:::::::::::::::::::::: gi|142 SGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKW 40 50 60 70 80 90 40 50 60 70 80 90 eg0178 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|142 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 100 110 120 130 140 150 100 110 120 130 eg0178 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNVRCLCYLTSD :::::::::::::::::::::::::::::::::: gi|142 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFS 160 170 180 190 200 210 gi|142 GARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQL 220 230 240 250 260 270 >>gi|109095654|ref|XP_001118505.1| PREDICTED: similar to (407 aa) initn: 852 init1: 812 opt: 812 Z-score: 1012.1 bits: 194.6 E(): 9.8e-48 Smith-Waterman score: 812; 99.194% identity (100.000% similar) in 124 aa overlap (1-124:103-226) 10 20 30 eg0178 AAAASLATAAGSEDAEKKVLATKVLGTVKW :::.:::::::::::::::::::::::::: gi|109 SGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAATSLATAAGSEDAEKKVLATKVLGTVKW 80 90 100 110 120 130 40 50 60 70 80 90 eg0178 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 140 150 160 170 180 190 100 110 120 130 eg0178 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNVRCLCYLTSD :::::::::::::::::::::::::::::::::: gi|109 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFS 200 210 220 230 240 250 gi|109 GARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQL 260 270 280 290 300 310 >>gi|181484|gb|AAA35749.1| DNA-binding protein A (412 aa) initn: 852 init1: 812 opt: 812 Z-score: 1012.0 bits: 194.6 E(): 9.9e-48 Smith-Waterman score: 812; 99.194% identity (100.000% similar) in 124 aa overlap (1-124:138-261) 10 20 30 eg0178 AAAASLATAAGSEDAEKKVLATKVLGTVKW :::::::.:::::::::::::::::::::: gi|181 SGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKW 110 120 130 140 150 160 40 50 60 70 80 90 eg0178 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 170 180 190 200 210 220 100 110 120 130 eg0178 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNVRCLCYLTSD :::::::::::::::::::::::::::::::::: gi|181 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFS 230 240 250 260 270 280 gi|181 GARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQL 290 300 310 320 330 340 >>gi|14602477|gb|AAH09744.1| CSDA protein [Homo sapiens] (303 aa) initn: 808 init1: 808 opt: 808 Z-score: 1008.9 bits: 193.6 E(): 1.5e-47 Smith-Waterman score: 808; 98.387% identity (100.000% similar) in 124 aa overlap (1-124:68-191) 10 20 30 eg0178 AAAASLATAAGSEDAEKKVLATKVLGTVKW :::::::.:::::::::::::::::::::: gi|146 SGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKW 40 50 60 70 80 90 40 50 60 70 80 90 eg0178 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|146 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGEKGAEAANV 100 110 120 130 140 150 100 110 120 130 eg0178 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNVRCLCYLTSD :::::::::::::::::::::::::::::::::: gi|146 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPT 160 170 180 190 200 210 gi|146 YRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPS 220 230 240 250 260 270 >>gi|146186540|gb|AAI40645.1| CSDA protein [Bos taurus] (376 aa) initn: 808 init1: 780 opt: 781 Z-score: 974.1 bits: 187.4 E(): 1.3e-45 Smith-Waterman score: 781; 96.774% identity (97.581% similar) in 124 aa overlap (1-124:75-197) 10 20 30 eg0178 AAAASLATAAGSEDAEKKVLATKVLGTVKW :: :: : :.:::::::::::::::::::: gi|146 KSPAGGGAPPAPAPAALVSGNPGGDAAPGTAAPASSA-AVGSEDAEKKVLATKVLGTVKW 50 60 70 80 90 100 40 50 60 70 80 90 eg0178 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 110 120 130 140 150 160 100 110 120 130 eg0178 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNVRCLCYLTSD :::::::::::::::::::::::::::::::::: gi|146 TGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGLEAPAAAGQFS 170 180 190 200 210 220 gi|146 AARSQPRRPQFRPQYRRRFPPYHVGQTFDRRSRVFPHPSRMQAGEIGEMKDGVPEGAQLQ 230 240 250 260 270 280 134 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 15:41:12 2008 done: Fri Aug 8 15:44:18 2008 Total Scan time: 550.380 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]