hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-15555476/chunk_1/iprscan-20080808-15555476.nocrc
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Query sequence: eh00571
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00400.22.ls WD domain, G-beta repeat 129.6 8e-36 4
PF00400.22.fs WD domain, G-beta repeat 121.9 1.7e-33 4
PF00643.14.ls B-box zinc finger 53.6 6.1e-13 1
PF00643.14.fs B-box zinc finger 51.8 1.3e-12 1
PF00646.23.ls F-box domain 18.8 0.018 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00643.14.ls 1/1 140 179 .. 1 50 [] 53.6 6.1e-13
PF00643.14.fs 1/1 140 179 .. 1 50 [] 51.8 1.3e-12
PF00646.23.ls 1/1 600 647 .. 1 46 [] 18.8 0.018
PF00400.22.ls 1/4 767 805 .. 1 38 [] 26.1 0.00012
PF00400.22.fs 1/4 767 805 .. 1 38 [] 24.1 8.1e-06
PF00400.22.ls 2/4 809 845 .. 1 38 [] 48.8 1.7e-11
PF00400.22.fs 2/4 809 845 .. 1 38 [] 46.9 3e-12
PF00400.22.fs 3/4 849 884 .. 1 38 [] 17.5 0.00058
PF00400.22.ls 4/4 888 924 .. 1 38 [] 35.3 2e-07
PF00400.22.fs 4/4 888 924 .. 1 38 [] 33.4 2e-08
Alignments of top-scoring domains:
PF00643.14.ls: domain 1 of 1, from 140 to 179: score 53.6, E = 6.1e-13
*->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
+++r+Cp H+ +ls FC+ D+q++C +C++ H +gHt+
eh00571 140 HNWRYCPAHH--SPLSAFCCPDQQCICQDCCQE--H------SGHTI 176
vpl<-*
v+l
eh00571 177 VSL 179
PF00643.14.fs: domain 1 of 1, from 140 to 179: score 51.8, E = 1.3e-12
*->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
+++r+Cp H+ +ls FC+ D+q++C +C++ H +gHt+
eh00571 140 HNWRYCPAHH--SPLSAFCCPDQQCICQDCCQE--H------SGHTI 176
vpl<-*
v+l
eh00571 177 VSL 179
PF00646.23.ls: domain 1 of 1, from 600 to 647: score 18.8, E = 0.018
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ + LP++l + Il+ Ld+ l ++++VS++w ++ ++ +
eh00571 600 DFIRYLPIHLSKYILRMLDRHTLNKCASVSQHWAAMAQQVkMDLsAH 646
l<-*
eh00571 647 G 647
PF00400.22.ls: domain 1 of 4, from 767 to 805: score 26.1, E = 0.00012
*->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
+ +++gH ++V+++ + + ++l+sgS D +i+ Wd
eh00571 767 KAIPvEFrGHAGSVRALFLCEE-ENFLLSGSYDLSIRYWD 805
PF00400.22.fs: domain 1 of 4, from 767 to 805: score 24.1, E = 8.1e-06
*->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
+ +++gH ++V+++ + + ++l+sgS D +i+ Wd
eh00571 767 KAIPvEFrGHAGSVRALFLCEE-ENFLLSGSYDLSIRYWD 805
PF00400.22.ls: domain 2 of 4, from 809 to 845: score 48.8, E = 1.7e-11
*->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
g c+++++gH++t+tc++ + + +l+sg+rD+ +k+Wd
eh00571 809 GVCTrIFgGHQGTITCMDLCKN---RLVSGGRDCQVKVWD 845
PF00400.22.fs: domain 2 of 4, from 809 to 845: score 46.9, E = 3e-12
*->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
g c+++++gH++t+tc++ + + +l+sg+rD+ +k+Wd
eh00571 809 GVCTrIFgGHQGTITCMDLCKN---RLVSGGRDCQVKVWD 845
PF00400.22.fs: domain 3 of 4, from 849 to 884: score 17.5, E = 0.00058
*->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
g+c++++++ +++ + +++ +++s+++ g +k+W+
eh00571 849 GKCLkTFrHK-DPILATRINDT---YIVSSCERGLVKVWH 884
PF00400.22.ls: domain 4 of 4, from 888 to 924: score 35.3, E = 2e-07
*->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
+++++l+gH+++V c+ f++ +l+sgS Dg + W+
eh00571 888 AQLVkTLsGHEGAVKCLFFDQW---HLLSGSTDGLVMAWS 924
PF00400.22.fs: domain 4 of 4, from 888 to 924: score 33.4, E = 2e-08
*->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
+++++l+gH+++V c+ f++ +l+sgS Dg + W+
eh00571 888 AQLVkTLsGHEGAVKCLFFDQW---HLLSGSTDGLVMAWS 924
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