hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-15555476/chunk_1/iprscan-20080808-15555476.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: eh00571
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 127.5    1.5e-33   4
SM00589                                                  86.3    3.7e-21   1
SM00336                                                  49.5    4.4e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00336    1/2      86   136 ..     1    51 []     2.5        3
SM00336    2/2     140   179 ..     1    51 []    47.0  2.5e-09
SM00589    1/1     386   439 ..     1    56 []    86.3  3.7e-21
SM00320    1/4     766   805 ..     1    46 []    25.3   0.0084
SM00320    2/4     808   845 ..     1    46 []    42.7  4.9e-08
SM00320    3/4     848   884 ..     1    46 []    27.5   0.0019
SM00320    4/4     887   924 ..     1    46 []    32.0  8.2e-05

Alignments of top-scoring domains:
SM00336: domain 1 of 2, from 86 to 136: score 2.5, E = 3
                   *->eraplCeeHgd...eepaeffCveedgallCrdCdeageHqanklfr
                      ++++lC+++ d++++ +a+  C  ++++ +C++  +   Hq+n   +
     eh00571    86    GKEVLCDFCLDdtrRVKAVKSC-LTCMVNYCEEHLQP--HQVNIKLQ 129  

                   gHrvvll<-*
                   +H        
     eh00571   130 SHLLTEP    136  

SM00336: domain 2 of 2, from 140 to 179: score 47.0, E = 2.5e-09
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      + +++C+ H+  +p+  fC + d++++C dC+++  H      +gH+
     eh00571   140    HNWRYCPAHH--SPLSAFC-CPDQQCICQDCCQE--H------SGHT 175  

                   vvll<-*
                   +v+l   
     eh00571   176 IVSL    179  

SM00589: domain 1 of 1, from 386 to 439: score 86.3, E = 3.7e-21
                   *->avdvtLDPdTAhpkLlLSeDrrsVrygdtkqkGsnlpdnPeRFdsyp
                      a+d+t+DPdTAh +L+L e +r+V++++++++  ++pd P RF ++ 
     eh00571   386    AYDITFDPDTAHKYLRLQEENRKVTNTTPWEH--PYPDLPSRFLHWR 430  

                   cVLGsegFs<-*
                   +VL +++++   
     eh00571   431 QVLSQQSLY    439  

SM00320: domain 1 of 4, from 766 to 805: score 25.3, E = 0.0084
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +    +++gH g  +V+++  +         n+l+sgs D +ir W
     eh00571   766    VkAIPVEFRGHAG--SVRALFLCEEE------NFLLSGSyDLSIRYW 804  

                   d<-*
                   d   
     eh00571   805 D    805  

SM00320: domain 2 of 4, from 808 to 845: score 42.7, E = 4.9e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ ++r++ gH+g   +t+++ + +        +l+sg++D+++++W
     eh00571   808    SgVCTRIFGGHQG--TITCMDLCKN--------RLVSGGrDCQVKVW 844  

                   d<-*
                   d   
     eh00571   845 D    845  

SM00320: domain 3 of 4, from 848 to 884: score 27.5, E = 0.0019
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+k+l+t++ H++  p+++ +++++        +++s+++ g +++W
     eh00571   848    TgKCLKTFR-HKD--PILATRINDT--------YIVSSCeRGLVKVW 883  

                   d<-*
                   +   
     eh00571   884 H    884  

SM00320: domain 4 of 4, from 887 to 924: score 32.0, E = 8.2e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +l++tl+gH+g  +V ++ f++         +l+sgs+Dg +  W
     eh00571   887    MaQLVKTLSGHEG--AVKCLFFDQW--------HLLSGStDGLVMAW 923  

                   d<-*
                   +   
     eh00571   924 S    924  

//