hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-16142635/chunk_1/iprscan-20080808-16142635.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eh00630 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05986.4.ls ADAM-TS Spacer 1 185.9 8.8e-53 1 PF05986.4.fs ADAM-TS Spacer 1 184.0 3.3e-52 1 PF00090.9.fs Thrombospondin type 1 domain 133.7 1.3e-39 6 PF00090.9.ls Thrombospondin type 1 domain 117.1 4.8e-32 5 PF01562.9.ls Reprolysin family propeptide 89.6 8.6e-24 1 PF01562.9.fs Reprolysin family propeptide 88.5 1e-23 1 PF01421.9.fs Reprolysin (M12B) family zinc metallo 87.4 2e-23 3 PF01421.9.ls Reprolysin (M12B) family zinc metallo 85.0 2.1e-22 1 PF08686.1.fs PLAC (protease and lacunin) domain 59.5 1e-15 1 PF08686.1.ls PLAC (protease and lacunin) domain 61.5 2.6e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01562.9.ls 1/1 77 246 .. 1 165 [] 89.6 8.6e-24 PF01562.9.fs 1/1 129 246 .. 51 165 .] 88.5 1e-23 PF01421.9.ls 1/1 338 541 .. 1 203 [] 85.0 2.1e-22 PF01421.9.fs 2/3 400 541 .. 63 203 .] 86.4 3.7e-23 PF00090.9.fs 1/6 636 686 .. 1 55 [] 55.3 5.3e-16 PF00090.9.ls 1/5 636 686 .. 1 55 [] 57.2 4.9e-14 PF05986.4.fs 1/1 792 904 .. 1 128 [] 184.0 3.3e-52 PF05986.4.ls 1/1 792 904 .. 1 128 [] 185.9 8.8e-53 PF00090.9.fs 3/6 981 1034 .. 4 55 .] 17.9 9.7e-05 PF00090.9.ls 2/5 981 1034 .. 1 55 [] 17.7 0.00044 PF00090.9.ls 3/5 1036 1091 .. 1 55 [] 13.8 0.0013 PF00090.9.fs 4/6 1041 1063 .. 4 26 .. 21.7 7e-06 PF00090.9.ls 4/5 1099 1158 .. 1 55 [] 13.7 0.0013 PF00090.9.fs 5/6 1102 1122 .. 4 24 .. 20.5 1.6e-05 PF00090.9.fs 6/6 1174 1196 .. 5 27 .. 17.4 0.00014 PF00090.9.ls 5/5 1174 1220 .. 1 55 [] 14.6 0.001 PF08686.1.ls 1/1 1230 1262 .. 1 35 [] 61.5 2.6e-15 PF08686.1.fs 1/1 1230 1262 .. 1 35 [] 59.5 1e-15 Alignments of top-scoring domains: PF01562.9.ls: domain 1 of 1, from 77 to 246: score 89.6, E = 8.6e-24 *->lLlllllpglaglg...aalgtpweyssyEvviPekltsegkrrvkq l+ l++ ++ a+l +++ ++++ ++y v+P ++ s+g+ + eh00630 77 LCCLCCASVAAALAsdsSSGASG-LNDDYVFVTPVEVDSAGSYISHD 122 dldirlkslkeekyeeelsYvlrieGkpyiLhLeknrgllapdftvttYd l + k+ ++++ + l Y++ ++G++++L L++ +l+++f v+ + eh00630 123 ILHNGRKKRSAQNARSSLHYRFSAFGQELHLELKPSA-ILSSHFIVQVLG 171 edGtlvteepliqdhCyYqGyVeGypnSaVslSTCsGGLRGllqlenvsY +dG+ t+ p +q C+YqG +++++ S+V++STC+ GL Gl++ ++ eh00630 172 KDGASETQKPEVQQ-CFYQGFIRNDSSSSVAVSTCA-GLSGLIRTRKNEF 219 gIEPlesssgfe....A.Q.rlPHiiY<-* +I Pl+ + e++ + + + +PH++Y eh00630 220 LISPLPQLLAQEhnysSpAgHHPHVLY 246 PF01562.9.fs: domain 1 of 1, from 129 to 246: score 88.5, E = 1e-23 *->kslkeekyeeelsYvlrieGkpyiLhLeknrgllapdftvttYdedG k+ ++++ + l Y++ ++G++++L L++ +l+++f v+ ++dG eh00630 129 KKRSAQNARSSLHYRFSAFGQELHLELKPSA-ILSSHFIVQVLGKDG 174 tlvteepliqdhCyYqGyVeGypnSaVslSTCsGGLRGllqlenvsYgIE + t+ p +q C+YqG +++++ S+V++STC+ GL Gl++ +++I eh00630 175 ASETQKPEVQQ-CFYQGFIRNDSSSSVAVSTCA-GLSGLIRTRKNEFLIS 222 Plesssgfe....A.Q.rlPHiiY<-* Pl+ + e++ + + + +PH++Y eh00630 223 PLPQLLAQEhnysSpAgHHPHVLY 246 PF01421.9.ls: domain 1 of 1, from 338 to 541: score 85.0, E = 2.1e-22 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrp.....q +E +V+D++m++k+g ++++++ ++N+v + +++++ +++ eh00630 338 --VETLVVADKKMVEKHG--KGNVTTYILTVMNMVSGLFKDgtigsD 380 LNIrVv.LvgLEIWsdgDk..InvqsdandTLhsFgeWRetdLlkr..ks +N+ Vv+L+ LE + +++ ++ +a++ L+sF +W ++ L+ +++k+ eh00630 381 INVVVVsLILLE----QEPggLLINHHADQSLNSFCQW-QSALIGKngKR 425 HDnAqLLtgidf......dgntiGaAyvggmCspkrSvGVvqdhspivll HD+A+LLtg d + ++++ t+G A+++gmCs+ rS+ +++d l+ eh00630 426 HDHAILLTGFDIcswknePCDTLGFAPISGMCSKYRSCTINEDT---GLG 472 vAvtMAHELGHNLGmtHDdkntdgCtCegggsCIMnpvassspskKkF.. +A t+AHE GHN+Gm HD++ + +C +++ IM+p +++ ++ F+ eh00630 473 LAFTIAHESGHNFGMIHDGEGN-PCRK--AEGNIMSPTLTGNNGV--Fsw 517 SnCSkddyqkFltkqkpqCLlNkP<-* S+CS+ +++kFl+ ++ CL ++P eh00630 518 SSCSRQYLKKFLSTPQAGCLVDEP 541 PF01421.9.fs: domain 2 of 3, from 400 to 541: score 86.4, E = 3.7e-23 *->vqsdandTLhsFgeWRetdLlkr..ksHDnAqLLtgidf......dg ++ +a++ L+sF +W ++ L+ +++k+HD+A+LLtg d + ++++ eh00630 400 INHHADQSLNSFCQW-QSALIGKngKRHDHAILLTGFDIcswknePC 445 ntiGaAyvggmCspkrSvGVvqdhspivllvAvtMAHELGHNLGmtHDdk t+G A+++gmCs+ rS+ +++d l++A t+AHE GHN+Gm HD++ eh00630 446 DTLGFAPISGMCSKYRSCTINEDT---GLGLAFTIAHESGHNFGMIHDGE 492 ntdgCtCegggsCIMnpvassspskKkF..SnCSkddyqkFltkqkpqCL + +C +++ IM+p +++ ++ F+ S+CS+ +++kFl+ ++ CL eh00630 493 GN-PCRK--AEGNIMSPTLTGNNGV--FswSSCSRQYLKKFLSTPQAGCL 537 lNkP<-* ++P eh00630 538 VDEP 541 PF00090.9.fs: domain 1 of 6, from 636 to 686: score 55.3, E = 5.3e-16 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s Ws WS+CS TCG+G++ R cn+p+Pq +gg +C+g + + eh00630 636 SAWSKWSECSRTCGGGVKFQERHCNNPKPQ-YGGLFCPGSSRI--YQ 679 aCdmmdkC<-* C + +C eh00630 680 LC-NINPC 686 PF00090.9.ls: domain 1 of 5, from 636 to 686: score 57.2, E = 4.9e-14 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s Ws WS+CS TCG+G++ R cn+p+Pq +gg +C+g + + eh00630 636 SAWSKWSECSRTCGGGVKFQERHCNNPKPQ-YGGLFCPGSSRI--YQ 679 aCdmmdkC<-* C + +C eh00630 680 LC-NINPC 686 PF05986.4.fs: domain 1 of 1, from 792 to 904: score 184.0, E = 3.3e-52 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA k++kG + +++ + Y+ Vv+IPaGAr+I+I+El+ S+ +yLA eh00630 792 KFYKGLYLNQHKANEYYPVVLIPAGARSIEIQELQVSS-----SYLA 833 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt +++ + + y+L G w i++pg+ f++aGT+feY+r s + +pE+L eh00630 834 VRSLS-QK-YYLTGGWSIDWPGE-FPFAGTTFEYQR-SFN----RPERLY 875 atGPtnepLivqvLfqggapnpgikYeYtiP<-* a+GPtne+L+ ++L+q ++npgi+++Y +P eh00630 876 APGPTNETLVFEILMQ--GKNPGIAWKYALP 904 PF05986.4.ls: domain 1 of 1, from 792 to 904: score 185.9, E = 8.8e-53 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA k++kG + +++ + Y+ Vv+IPaGAr+I+I+El+ S+ +yLA eh00630 792 KFYKGLYLNQHKANEYYPVVLIPAGARSIEIQELQVSS-----SYLA 833 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt +++ + + y+L G w i++pg+ f++aGT+feY+r s + +pE+L eh00630 834 VRSLS-QK-YYLTGGWSIDWPGE-FPFAGTTFEYQR-SFN----RPERLY 875 atGPtnepLivqvLfqggapnpgikYeYtiP<-* a+GPtne+L+ ++L+q ++npgi+++Y +P eh00630 876 APGPTNETLVFEILMQ--GKNPGIAWKYALP 904 PF00090.9.fs: domain 3 of 6, from 981 to 1034: score 17.9, E = 9.7e-05 *->seWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.....le +eWS CS+ C +G+++R+ c++++P +++e ++ + +++ + eh00630 981 GEWSTCSKACAGGQQSRKIQCVQKKP--FQKEEAVLHSLCpvstpTQ 1025 teaCdmmdkC<-* ++aC + + C eh00630 1026 VQAC-NSHAC 1034 PF00090.9.ls: domain 2 of 5, from 981 to 1034: score 17.7, E = 0.00044 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... +eWS CS+ C +G+++R+ c++++P +++e ++ + ++ eh00630 981 ---GEWSTCSKACAGGQQSRKIQCVQKKP--FQKEEAVLHSLCpvst 1022 .leteaCdmmdkC<-* + +++aC + + C eh00630 1023 pTQVQAC-NSHAC 1034 PF00090.9.ls: domain 3 of 5, from 1036 to 1091: score 13.8, E = 0.0013 *->spWs..eWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.. +Ws ++WS+CS+TCG G+r R +c+ g++ t++ + + eh00630 1036 PQWSlgPWSQCSKTCGRGVRKRELLCK-------GSAAETLPESQct 1075 ......leteaCdmmdkC<-* + ++++l+ e C C eh00630 1076 slprpeLQ-EGC-VLGRC 1091 PF00090.9.fs: domain 4 of 6, from 1041 to 1063: score 21.7, E = 7e-06 *->seWSpCSVTCGkGirtRqRvcns<-* ++WS+CS+TCG G+r R +c++ eh00630 1041 GPWSQCSKTCGRGVRKRELLCKG 1063 PF00090.9.ls: domain 4 of 5, from 1099 to 1158: score 13.7, E = 0.0013 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... + s WS+CS TCG G+r R ++c + ++g+ t + ++ ++ eh00630 1099 WVASSWSECSATCGLGVRKREMKCREKG---FQGKLITFPERRcrni 1142 ......leteaCdmmdkC<-* ++++ +le e C + + C eh00630 1143 kkpnldLE-ETC-NRRAC 1158 PF00090.9.fs: domain 5 of 6, from 1102 to 1122: score 20.5, E = 1.6e-05 *->seWSpCSVTCGkGirtRqRvc<-* s WS+CS TCG G+r R ++c eh00630 1102 SSWSECSATCGLGVRKREMKC 1122 PF00090.9.fs: domain 6 of 6, from 1174 to 1196: score 17.4, E = 0.00014 *->eWSpCSVTCGkGirtRqRvcnsp<-* +W +C+VTCG+G++tR c+++ eh00630 1174 PWQQCTVTCGGGVQTRSVHCVQQ 1196 PF00090.9.ls: domain 5 of 5, from 1174 to 1220: score 14.6, E = 0.001 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +W +C+VTCG+G++tR c+++ +++C + + + + eh00630 1174 ----PWQQCTVTCGGGVQTRSVHCVQQG---RPSSSCLLHQKPPVLR 1213 aCdmmdkC<-* aC + C eh00630 1214 AC-NTNFC 1220 PF08686.1.ls: domain 1 of 1, from 1230 to 1262: score 61.5, E = 2.6e-15 *->eCrDsprlAnCelVvqakLCshkyYsqfCCrSCtr<-* +C+D ++ +C+lV+q++ C+hk+Y+++CC+SCtr eh00630 1230 SCVDFFN--WCHLVPQHGVCNHKFYGKQCCKSCTR 1262 PF08686.1.fs: domain 1 of 1, from 1230 to 1262: score 59.5, E = 1e-15 *->eCrDsprlAnCelVvqakLCshkyYsqfCCrSCtr<-* +C+D ++ +C+lV+q++ C+hk+Y+++CC+SCtr eh00630 1230 SCVDFFN--WCHLVPQHGVCNHKFYGKQCCKSCTR 1262 //