hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-16260615/chunk_1/iprscan-20080808-16260615.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eh00644 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08441.2.fs Integrin alpha 448.0 9.5e-136 1 PF08441.2.ls Integrin alpha 449.7 3.5e-132 1 PF00092.18.fs von Willebrand factor type A domain 173.2 2.8e-54 1 PF00092.18.ls von Willebrand factor type A domain 175.2 1.5e-49 1 PF01839.13.fs FG-GAP repeat 66.7 1.4e-18 4 PF01839.13.ls FG-GAP repeat 69.5 9.6e-18 3 PF00357.10.fs Integrin alpha cytoplasmic region 21.5 2.2e-06 1 PF00357.10.ls Integrin alpha cytoplasmic region 23.5 0.00068 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00092.18.fs 1/1 222 409 .. 1 195 [] 173.2 2.8e-54 PF00092.18.ls 1/1 222 409 .. 1 195 [] 175.2 1.5e-49 PF01839.13.fs 2/4 539 578 .. 1 36 [] 20.7 3.8e-05 PF01839.13.ls 1/3 539 578 .. 1 36 [] 22.7 0.0012 PF01839.13.ls 2/3 602 637 .. 1 36 [] 26.4 9.6e-05 PF01839.13.fs 3/4 602 637 .. 1 36 [] 24.5 3e-06 PF08441.2.ls 1/1 697 1108 .. 1 483 [] 449.7 3.5e-132 PF08441.2.fs 1/1 697 1108 .. 1 483 [] 448.0 9.5e-136 PF00357.10.fs 1/1 1203 1217 .. 1 15 [] 21.5 2.2e-06 PF00357.10.ls 1/1 1203 1217 .. 1 15 [] 23.5 0.00068 Alignments of top-scoring domains: PF00092.18.fs: domain 1 of 1, from 222 to 409: score 173.2, E = 2.8e-54 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY D+v + D S+Si + ++ vk+F++k+v+ ldigp++t+Vgl+qY eh00644 222 DVVVVCDESNSIYP---WDAVKNFLEKFVQ-GLDIGPTKTQVGLIQY 264 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs ++++r++f+Ln+y++k++++ a ++ ++y g+ Tn t A++ya++++ s eh00644 265 ANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTN-TFGAIQYARKYAYS 313 stMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkkgvg ++g R a+kv++++TDG+s+dg+ + +++++ + eh00644 314 A-------ASGGRR-SATKVMVVVTDGESHDGSMLKaVIDQCNHD----N 351 itvfavGvG.........gdvdeaeLr.iasepcseghvfyvedfdalwl i +f+++v + +++ + + +e++ ias+p e+++f+v+d+ al eh00644 352 ILRFGIAVLgylnrnaldTKNLIKEIKaIASIP-TERYFFNVSDEAALLE 400 qlqdiqeql<-* ++ ++ eq+ eh00644 401 KAGTLGEQI 409 PF00092.18.ls: domain 1 of 1, from 222 to 409: score 175.2, E = 1.5e-49 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY D+v + D S+Si + ++ vk+F++k+v+ ldigp++t+Vgl+qY eh00644 222 DVVVVCDESNSIYP---WDAVKNFLEKFVQ-GLDIGPTKTQVGLIQY 264 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs ++++r++f+Ln+y++k++++ a ++ ++y g+ Tn t A++ya++++ s eh00644 265 ANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTN-TFGAIQYARKYAYS 313 stMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkkgvg ++g R a+kv++++TDG+s+dg+ + +++++ + eh00644 314 A-------ASGGRR-SATKVMVVVTDGESHDGSMLKaVIDQCNHD----N 351 itvfavGvG.........gdvdeaeLr.iasepcseghvfyvedfdalwl i +f+++v + +++ + + +e++ ias+p e+++f+v+d+ al eh00644 352 ILRFGIAVLgylnrnaldTKNLIKEIKaIASIP-TERYFFNVSDEAALLE 400 qlqdiqeql<-* ++ ++ eq+ eh00644 401 KAGTLGEQI 409 PF01839.13.fs: domain 2 of 4, from 539 to 578: score 20.7, E = 3.8e-05 *->fgssvaagDlnGDGrpDlvv.gaPgad.ggt.d.gsvyll<-* fgs ++ +D++ D ++D+++ gaP++ ++ +++g+vyl+ eh00644 539 FGSVLCSVDVDKDTITDVLLvGAPMYMsDLKkEeGRVYLF 578 PF01839.13.ls: domain 1 of 3, from 539 to 578: score 22.7, E = 0.0012 *->fgssvaagDlnGDGrpDlvv.gaPgad.ggt.d.gsvyll<-* fgs ++ +D++ D ++D+++ gaP++ ++ +++g+vyl+ eh00644 539 FGSVLCSVDVDKDTITDVLLvGAPMYMsDLKkEeGRVYLF 578 PF01839.13.ls: domain 2 of 3, from 602 to 637: score 26.4, E = 9.6e-05 *->fgssvaag.DlnGDGrpDlvvgaPgadggt.d..gsvyll<-* fgs++aa +D+n DG++D++vg P ++++g+vy++ eh00644 602 FGSAIAALsDINMDGFNDVIVGSP----LEnQnsGAVYIY 637 PF01839.13.fs: domain 3 of 4, from 602 to 637: score 24.5, E = 3e-06 *->fgssvaag.DlnGDGrpDlvvgaPgadggt.d..gsvyll<-* fgs++aa +D+n DG++D++vg P ++++g+vy++ eh00644 602 FGSAIAALsDINMDGFNDVIVGSP----LEnQnsGAVYIY 637 PF08441.2.ls: domain 1 of 1, from 697 to 1108: score 449.7, E = 3.5e-132 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg s+ +++v + sftP++i + +kn + + +++Cf+++ eh00644 697 SQSIADVAIEASFTPEKITLVNKN----------AQIILKLCFSAKF 733 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetksstltrnlvlg ++++q ++q+ + y+++LD++++++r +sR+lF+ e++++ l++n+v++ eh00644 734 RPTKQ--NNQVAIVYNITLDADGFSSRVTSRGLFK-ENNERCLQKNMVVN 780 nqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlpg ++C ++++y+++ D++ ++++r+++sL ++pg eh00644 781 Q--AQSCPEHIIYIQE---PSDVVNSLDLRVDISL-----------ENPG 814 llqPvLnqysptsitfqipFeKnCGeDniCvaDLqLsvsfslre.gtptL + P+L +ys+t +f+ipF K+CGeD++C++DL L+v+ ++ +++p++ eh00644 815 T-SPALEAYSETAKVFSIPFHKDCGEDGLCISDLVLDVRQIPAAqEQPFI 863 vvGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverlqnpesek v ++k+Lt s+t++Nk E+AY++ +vv ++++L+f+++ + p +++ eh00644 864 VSNQNKRLTFSVTLKNK-RESAYNTGIVVDFSENLFFASF---SLPVDGT 909 plsCesnkengtrsvtCdlGnPimkagsqvtftitFdvsslsglgdslef +++C++ ++++sv Cd+G+P++k+++qvtfti Fd+ +l++l++++++ eh00644 910 EVTCQVA--ASQKSVACDVGYPALKREQQVTFTINFDF-NLQNLQNQASL 956 dlqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvffngsnw +qa S+++e+ n+ dn v+l+ip++y+a+++++ + + + + ++++ + eh00644 957 SFQALSESQEE--NKADNLVNLKIPLLYDAEIHLTRSTNINFYEISSD-G 1003 egesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqwPyelasd + +s ++s+edvG p++++ ++v +G+ +v++a++ i++P+ + eh00644 1004 NVPSIVHSFEDVG---PKFIFSLKV-TTGSV-PVSMATVIIHIPQYT--- 1045 sngkvpllYllevqt.gsksegnvsCspqnlninplnldlsssgttprle ++++ pl+Yl++vqt++ g +sC+ + inpl++ + ss++++++e eh00644 1046 KEKN-PLMYLTGVQTdK---AGDISCNAD---INPLKIGQTSSSVSFKSE 1088 allrnsrerqeigesevaqsykvLdCsssnasClrirC<-* +++++ k+L+C +asC++++C eh00644 1089 NFRHT----------------KELNC--RTASCSNVTC 1108 PF08441.2.fs: domain 1 of 1, from 697 to 1108: score 448.0, E = 9.5e-136 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg s+ +++v + sftP++i + +kn + + +++Cf+++ eh00644 697 SQSIADVAIEASFTPEKITLVNKN----------AQIILKLCFSAKF 733 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetksstltrnlvlg ++++q ++q+ + y+++LD++++++r +sR+lF+ e++++ l++n+v++ eh00644 734 RPTKQ--NNQVAIVYNITLDADGFSSRVTSRGLFK-ENNERCLQKNMVVN 780 nqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlpg ++C ++++y+++ D++ ++++r+++sL ++pg eh00644 781 Q--AQSCPEHIIYIQE---PSDVVNSLDLRVDISL-----------ENPG 814 llqPvLnqysptsitfqipFeKnCGeDniCvaDLqLsvsfslre.gtptL + P+L +ys+t +f+ipF K+CGeD++C++DL L+v+ ++ +++p++ eh00644 815 T-SPALEAYSETAKVFSIPFHKDCGEDGLCISDLVLDVRQIPAAqEQPFI 863 vvGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverlqnpesek v ++k+Lt s+t++Nk E+AY++ +vv ++++L+f+++ + p +++ eh00644 864 VSNQNKRLTFSVTLKNK-RESAYNTGIVVDFSENLFFASF---SLPVDGT 909 plsCesnkengtrsvtCdlGnPimkagsqvtftitFdvsslsglgdslef +++C++ ++++sv Cd+G+P++k+++qvtfti Fd+ +l++l++++++ eh00644 910 EVTCQVA--ASQKSVACDVGYPALKREQQVTFTINFDF-NLQNLQNQASL 956 dlqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvffngsnw +qa S+++e+ n+ dn v+l+ip++y+a+++++ + + + + ++++ + eh00644 957 SFQALSESQEE--NKADNLVNLKIPLLYDAEIHLTRSTNINFYEISSD-G 1003 egesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqwPyelasd + +s ++s+edvG p++++ ++v +G+ +v++a++ i++P+ + eh00644 1004 NVPSIVHSFEDVG---PKFIFSLKV-TTGSV-PVSMATVIIHIPQYT--- 1045 sngkvpllYllevqt.gsksegnvsCspqnlninplnldlsssgttprle ++++ pl+Yl++vqt++ g +sC+ + inpl++ + ss++++++e eh00644 1046 KEKN-PLMYLTGVQTdK---AGDISCNAD---INPLKIGQTSSSVSFKSE 1088 allrnsrerqeigesevaqsykvLdCsssnasClrirC<-* +++++ k+L+C +asC++++C eh00644 1089 NFRHT----------------KELNC--RTASCSNVTC 1108 PF00357.10.fs: domain 1 of 1, from 1203 to 1217: score 21.5, E = 2.2e-06 *->KcGFFKRkykpqeee<-* K+GFFKRky +++++ eh00644 1203 KLGFFKRKYEKMTKN 1217 PF00357.10.ls: domain 1 of 1, from 1203 to 1217: score 23.5, E = 0.00068 *->KcGFFKRkykpqeee<-* K+GFFKRky +++++ eh00644 1203 KLGFFKRKYEKMTKN 1217 //