hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-16382695/chunk_1/iprscan-20080808-16382695.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eh00656 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07474.2.ls G2F domain 337.5 2.1e-98 1 PF07474.2.fs G2F domain 335.7 7.3e-98 1 PF00086.8.ls Thyroglobulin type-1 repeat 153.3 5.7e-43 2 PF00086.8.fs Thyroglobulin type-1 repeat 149.7 7.4e-42 2 PF00058.8.fs Low-density lipoprotein receptor repe 129.1 4.3e-38 4 PF00058.8.ls Low-density lipoprotein receptor repe 135.3 1.5e-37 4 PF06119.4.fs Nidogen-like 123.7 8e-36 1 PF06119.4.ls Nidogen-like 125.5 1.3e-34 1 PF07645.6.fs Calcium binding EGF domain 103.7 9.8e-31 4 PF07645.6.ls Calcium binding EGF domain 106.3 8.3e-29 4 PF00008.17.ls EGF-like domain 98.9 1.4e-26 5 PF00008.17.fs EGF-like domain 93.3 2.7e-25 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06119.4.fs 1/1 185 279 .. 1 102 [] 123.7 8e-36 PF06119.4.ls 1/1 185 279 .. 1 102 [] 125.5 1.3e-34 PF07474.2.ls 1/1 532 723 .. 1 212 [] 337.5 2.1e-98 PF07474.2.fs 1/1 532 723 .. 1 212 [] 335.7 7.3e-98 PF00008.17.fs 2/5 769 805 .. 1 38 [] 24.0 8.1e-06 PF00008.17.ls 2/5 769 805 .. 1 38 [] 25.9 0.00013 PF07645.6.fs 2/4 807 848 .. 1 55 [] 43.6 1.8e-12 PF07645.6.ls 2/4 807 848 .. 1 55 [] 45.3 1.9e-10 PF00008.17.ls 3/5 811 848 .. 1 38 [] 25.0 0.00025 PF07645.6.fs 4/4 898 935 .. 1 55 [] 42.6 3.6e-12 PF07645.6.ls 4/4 898 935 .. 1 55 [] 44.3 3.9e-10 PF00086.8.fs 1/2 946 1011 .. 1 81 [] 82.6 1.1e-21 PF00086.8.ls 1/2 946 1011 .. 1 81 [] 84.5 3.1e-22 PF00086.8.ls 2/2 1025 1090 .. 1 81 [] 68.9 1.5e-17 PF00086.8.fs 2/2 1025 1090 .. 1 81 [] 67.0 5.5e-17 PF00058.8.ls 1/4 1160 1202 .. 1 47 [] 30.4 5.8e-06 PF00058.8.fs 1/4 1160 1202 .. 1 47 [] 28.5 8.3e-08 PF00058.8.fs 2/4 1204 1245 .. 1 47 [] 56.3 3.7e-16 PF00058.8.ls 2/4 1204 1245 .. 1 47 [] 58.1 2.6e-14 PF00058.8.fs 3/4 1247 1290 .. 1 47 [] 43.4 2.7e-12 PF00058.8.ls 3/4 1247 1290 .. 1 47 [] 45.4 1.8e-10 PF00058.8.ls 4/4 1292 1332 .. 1 47 [] 1.4 1.7 Alignments of top-scoring domains: PF06119.4.fs: domain 1 of 1, from 185 to 279: score 123.7, E = 8e-36 *->lNTFQavLatdgsaTfaiFiYekgGLnWdsgaesggdvkqvsngvrA lNTFQavLa+dgs ++a+F+Y+ +GL++ ++ ++++++v+++ +A eh00656 185 LNTFQAVLASDGSDSYALFLYPANGLQFLGTR--PKESYNVQLQLPA 229 rAGFnggdgtslwk.e.fll.PnSgtasikeLseyrPDRFLtSNvGqPGk r+GF++g + l k+e+ +++ +S ++s+k+L+++ SN+G+PG+ eh00656 230 RVGFCRGEADDL-KsEgPYFsLTSTEQSVKNLYQL-------SNLGIPGV 271 WmFRVDga<-* W F++++ eh00656 272 WAFHIGST 279 PF06119.4.ls: domain 1 of 1, from 185 to 279: score 125.5, E = 1.3e-34 *->lNTFQavLatdgsaTfaiFiYekgGLnWdsgaesggdvkqvsngvrA lNTFQavLa+dgs ++a+F+Y+ +GL++ ++ ++++++v+++ +A eh00656 185 LNTFQAVLASDGSDSYALFLYPANGLQFLGTR--PKESYNVQLQLPA 229 rAGFnggdgtslwk.e.fll.PnSgtasikeLseyrPDRFLtSNvGqPGk r+GF++g + l k+e+ +++ +S ++s+k+L+++ SN+G+PG+ eh00656 230 RVGFCRGEADDL-KsEgPYFsLTSTEQSVKNLYQL-------SNLGIPGV 271 WmFRVDga<-* W F++++ eh00656 272 WAFHIGST 279 PF07474.2.ls: domain 1 of 1, from 532 to 723: score 337.5, E = 2.1e-98 *->kGePqRvnGsvsGvinvqnheNSWfgvvfenidLhsYvvsseGriyT +G+ +RvnG+vsG + v+ + +v+f+++dLh+Y+v+++Gr+yT eh00656 532 EGASHRVNGKVSGHLHVG--H---TPVHFTDVDLHAYIVGNDGRAYT 573 aIsGnvPpslGasLrpllpiggtigWlFAkeqSggalNGfqLTGGvFtre aIs ++P++++++L+pl+pigg++gWlFA e+ +g++NGf+L G+ Ft++ eh00656 574 AIS-HIPQPAAQALLPLTPIGGLFGWLFALEK-PGSENGFSLAGAAFTHD 621 seveFLGhtGaEeLtikQtfeGldsdESGVGgyLsvkieisGrvPaiaad ev+F +G+E ++i+Qt+eGld++ +yLs+k++i G+vP ++a+ eh00656 622 MEVTF--YPGEETVRITQTAEGLDPE-----NYLSIKTNIQGQVPYVPAN 664 aeviipDYtEeYvqtGpGvLtSsstrsftvrePDqDGGaeqqthsytvdQ ++++i +Y+E+Y+++ ++ +tS s+r+++++ Ga++qt+sy++ Q eh00656 665 FTAHISPYKELYHYS-DSTVTSTSSRDYSLTF-----GAINQTWSYRIHQ 708 tItYeeCrgrdaelp<-* +ItY+ Cr++++++ eh00656 709 NITYQVCRHAPRHPS 723 PF07474.2.fs: domain 1 of 1, from 532 to 723: score 335.7, E = 7.3e-98 *->kGePqRvnGsvsGvinvqnheNSWfgvvfenidLhsYvvsseGriyT +G+ +RvnG+vsG + v+ + +v+f+++dLh+Y+v+++Gr+yT eh00656 532 EGASHRVNGKVSGHLHVG--H---TPVHFTDVDLHAYIVGNDGRAYT 573 aIsGnvPpslGasLrpllpiggtigWlFAkeqSggalNGfqLTGGvFtre aIs ++P++++++L+pl+pigg++gWlFA e+ +g++NGf+L G+ Ft++ eh00656 574 AIS-HIPQPAAQALLPLTPIGGLFGWLFALEK-PGSENGFSLAGAAFTHD 621 seveFLGhtGaEeLtikQtfeGldsdESGVGgyLsvkieisGrvPaiaad ev+F +G+E ++i+Qt+eGld++ +yLs+k++i G+vP ++a+ eh00656 622 MEVTF--YPGEETVRITQTAEGLDPE-----NYLSIKTNIQGQVPYVPAN 664 aeviipDYtEeYvqtGpGvLtSsstrsftvrePDqDGGaeqqthsytvdQ ++++i +Y+E+Y+++ ++ +tS s+r+++++ Ga++qt+sy++ Q eh00656 665 FTAHISPYKELYHYS-DSTVTSTSSRDYSLTF-----GAINQTWSYRIHQ 708 tItYeeCrgrdaelp<-* +ItY+ Cr++++++ eh00656 709 NITYQVCRHAPRHPS 723 PF00008.17.fs: domain 2 of 5, from 769 to 805: score 24.0, E = 8.1e-06 *->CspnngpCsngGtCvdtp.ggytCeCppGyfllytGkrC<-* C + + C+ ++C+++ + +ytCeC+ G ++++G++C eh00656 769 CYDGSHMCDTTARCHPGTgVDYTCECASG--YQGDGRNC 805 PF00008.17.ls: domain 2 of 5, from 769 to 805: score 25.9, E = 0.00013 *->CspnngpCsngGtCvdtp.ggytCeCppGyfllytGkrC<-* C + + C+ ++C+++ + +ytCeC+ G ++++G++C eh00656 769 CYDGSHMCDTTARCHPGTgVDYTCECASG--YQGDGRNC 805 PF07645.6.fs: domain 2 of 4, from 807 to 848: score 43.6, E = 1.8e-12 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse D +ECa+g h C+ n vC+N GS++C+ C++GYe eh00656 807 DENECATGF-HRCG---PNSVCINLPGSYRCE----CRSGYE----- 840 nnedgtnC<-* +d+++C eh00656 841 FADDRHTC 848 PF07645.6.ls: domain 2 of 4, from 807 to 848: score 45.3, E = 1.9e-10 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse D +ECa+g h C+ n vC+N GS++C+ C++GYe eh00656 807 DENECATGF-HRCG---PNSVCINLPGSYRCE----CRSGYE----- 840 nnedgtnC<-* +d+++C eh00656 841 FADDRHTC 848 PF00008.17.ls: domain 3 of 5, from 811 to 848: score 25.0, E = 0.00025 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+ ++ C + C+++pg+y+CeC Gy ++ + ++C eh00656 811 CATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTC 848 PF07645.6.fs: domain 4 of 4, from 898 to 935: score 42.6, E = 3.6e-12 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse DvDEC + + C + +++C Nt GSF+C+ C +GY eh00656 898 DVDECSENR---C---HPAATCYNTPGSFSCR----CQPGYY----- 929 nnedgtnC<-* +dg++C eh00656 930 --GDGFQC 935 PF07645.6.ls: domain 4 of 4, from 898 to 935: score 44.3, E = 3.9e-10 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse DvDEC + + C + +++C Nt GSF+C+ C +GY eh00656 898 DVDECSENR---C---HPAATCYNTPGSFSCR----CQPGYY----- 929 nnedgtnC<-* +dg++C eh00656 930 --GDGFQC 935 PF00086.8.fs: domain 1 of 2, from 946 to 1011: score 82.6, E = 1.1e-21 *->CqrelervleslaaeqlkteehlesprglYvPnCdenGfYkpvQCdp C++++ +++++ a ++ r +++P+Cde G++ p QC++ eh00656 946 CEQQQRHAQAQYA---------YPGAR-FHIPQCDEQGNFLPLQCHG 982 SlggqrGeCWCVDaetGkelpGtrdvgGetPprC<-* ++G CWCVD++ G e+pGt ++ G+tPp+C eh00656 983 ----STGFCWCVDPD-GHEVPGTQTPPGSTPPHC 1011 PF00086.8.ls: domain 1 of 2, from 946 to 1011: score 84.5, E = 3.1e-22 *->CqrelervleslaaeqlkteehlesprglYvPnCdenGfYkpvQCdp C++++ +++++ a ++ r +++P+Cde G++ p QC++ eh00656 946 CEQQQRHAQAQYA---------YPGAR-FHIPQCDEQGNFLPLQCHG 982 SlggqrGeCWCVDaetGkelpGtrdvgGetPprC<-* ++G CWCVD++ G e+pGt ++ G+tPp+C eh00656 983 ----STGFCWCVDPD-GHEVPGTQTPPGSTPPHC 1011 PF00086.8.ls: domain 2 of 2, from 1025 to 1090: score 68.9, E = 1.5e-17 *->CqrelervleslaaeqlkteehlesprglYvPnCdenGfYkpvQCdp C+r +e le+ + ++ + YvP+Cd+ G++ p QC++ eh00656 1025 CERWRENLLEHYG---------GTPRDDQYVPQCDDLGHFIPLQCHG 1062 SlggqrGeCWCVDaetGkelpGtrdvgGetPprC<-* + CWCVD++ G+e++Gtr + G t p+C eh00656 1063 ----KSDFCWCVDKD-GREVQGTRSQPGTT-PAC 1090 PF00086.8.fs: domain 2 of 2, from 1025 to 1090: score 67.0, E = 5.5e-17 *->CqrelervleslaaeqlkteehlesprglYvPnCdenGfYkpvQCdp C+r +e le+ + ++ + YvP+Cd+ G++ p QC++ eh00656 1025 CERWRENLLEHYG---------GTPRDDQYVPQCDDLGHFIPLQCHG 1062 SlggqrGeCWCVDaetGkelpGtrdvgGetPprC<-* + CWCVD++ G+e++Gtr + G t p+C eh00656 1063 ----KSDFCWCVDKD-GREVQGTRSQPGTT-PAC 1090 PF00058.8.ls: domain 1 of 4, from 1160 to 1202: score 30.4, E = 5.8e-06 *->grlYWtDsslrkIasisvadln.GsdrrtlfsededlqhPngIavDp + +YWtD+ r +is+a+l+ G++ t++++ l +P+g+a+D+ eh00656 1160 RMVYWTDVAGR---TISRAGLElGAEPETIVNSG--LISPEGLAIDH 1201 i<-* i eh00656 1202 I 1202 PF00058.8.fs: domain 1 of 4, from 1160 to 1202: score 28.5, E = 8.3e-08 *->grlYWtDsslrkIasisvadln.GsdrrtlfsededlqhPngIavDp + +YWtD+ r +is+a+l+ G++ t++++ l +P+g+a+D+ eh00656 1160 RMVYWTDVAGR---TISRAGLElGAEPETIVNSG--LISPEGLAIDH 1201 i<-* i eh00656 1202 I 1202 PF00058.8.fs: domain 2 of 4, from 1204 to 1245: score 56.3, E = 3.7e-16 *->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi + +YWtDs+l+ +i++a l+Gs+r++lf d l +P++IavDpi eh00656 1204 RTMYWTDSVLD---KIESALLDGSERKVLFYTD--LVNPRAIAVDPI 1245 <-* eh00656 - - PF00058.8.ls: domain 2 of 4, from 1204 to 1245: score 58.1, E = 2.6e-14 *->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi + +YWtDs+l+ +i++a l+Gs+r++lf d l +P++IavDpi eh00656 1204 RTMYWTDSVLD---KIESALLDGSERKVLFYTD--LVNPRAIAVDPI 1245 <-* eh00656 - - PF00058.8.fs: domain 3 of 4, from 1247 to 1290: score 43.4, E = 2.7e-12 *->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi g+lYWtD++ + ++i+ l+G +rr+l++ d + Png++ Dp+ eh00656 1247 GNLYWTDWNRE-APKIETSSLDGENRRILINTD--IGLPNGLTFDPF 1290 <-* eh00656 - - PF00058.8.ls: domain 3 of 4, from 1247 to 1290: score 45.4, E = 1.8e-10 *->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi g+lYWtD++ + ++i+ l+G +rr+l++ d + Png++ Dp+ eh00656 1247 GNLYWTDWNRE-APKIETSSLDGENRRILINTD--IGLPNGLTFDPF 1290 <-* eh00656 - - PF00058.8.ls: domain 4 of 4, from 1292 to 1332: score 1.4, E = 1.7 *->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi ++l W D++++ ++++ +G+ r +++++ l P++I+ + eh00656 1292 KLLCWADAGTK---KLECTLPDGTG-RRVIQNN--LKYPFSIVSYAD 1332 <-* eh00656 - - //