hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-16382695/chunk_1/iprscan-20080808-16382695.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eh00656 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00682 487.3 7.4e-142 1 SM00539 236.2 2.7e-66 1 SM00135 220.7 1.2e-61 5 SM00211 170.3 2e-46 2 SM00181 117.2 1.8e-30 5 SM00179 111.7 8.5e-29 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00539 1/1 114 281 .. 1 185 [] 236.2 2.7e-66 SM00181 1/5 493 530 .. 1 32 [] 9.9 34 SM00682 1/1 531 763 .. 1 258 [] 487.3 7.4e-142 SM00179 1/4 765 806 .. 1 34 [] 5.9 0.31 SM00181 2/5 768 806 .. 1 32 [] 23.4 0.031 SM00179 2/4 807 849 .. 1 34 [] 49.9 3.3e-10 SM00181 3/5 810 849 .. 1 32 [] 29.9 0.00034 SM00179 3/4 856 897 .. 1 34 [] 3.6 0.6 SM00181 4/5 857 897 .. 1 32 [] 23.0 0.042 SM00179 4/4 898 936 .. 1 34 [] 52.3 6.5e-11 SM00181 5/5 901 936 .. 1 32 [] 31.0 0.00017 SM00211 1/2 966 1015 .. 1 58 [] 86.9 2.4e-21 SM00211 2/2 1046 1094 .. 1 58 [] 83.4 2.8e-20 SM00135 1/5 1140 1182 .. 1 51 [] 32.3 6.5e-05 SM00135 2/5 1184 1226 .. 1 51 [] 63.6 2.4e-14 SM00135 3/5 1227 1271 .. 1 51 [] 69.4 4.6e-16 SM00135 4/5 1272 1314 .. 1 51 [] 54.3 1.6e-11 SM00135 5/5 1315 1355 .. 1 51 [] 1.2 1.2e+02 Alignments of top-scoring domains: SM00539: domain 1 of 1, from 114 to 281: score 236.2, E = 2.7e-66 *->pFwadadtsyadegrGkvyYRedstFTtdpaiLdratedvregftdm pF+ad+dt ++grG+v+YRed t+pa+L +a+++vr gf+ + eh00656 114 PFLADIDT---SHGRGRVLYRED----TSPAVLGLAARYVRAGFPRS 153 gdeeFraksvvivTWenVaaygaqssliaa.fdneeggtNTFQavLatds + F++++++++TWe+V+ay++ +++ +++ ++NTFQavLa+ eh00656 154 A--RFTPTHAFLATWEQVGAYEEVKRGALPsG-----ELNTFQAVLAS-- 194 DgsrTyAiFlYpslGwtwdttagkddrngeggvpArAGFnggdgtflnev Dgs++yA+FlYp +G+++ t++k+++n++++ pAr+GF++g++++l ++ eh00656 195 DGSDSYALFLYPANGLQFLGTRPKESYNVQLQLPARVGFCRGEADDL-KS 243 dssytlpasgeeniknLaegSNvHgipGrWlFrvdgaei<-* +++y++ +s+e+++knL+++SN+ gipG+W+F+++++ eh00656 244 EGPYFSLTSTEQSVKNLYQLSNL-GIPGVWAFHIGSTSP 281 SM00181: domain 1 of 5, from 493 to 530: score 9.9, E = 34 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe<-* C+++++ Cs + + C++ +++ C+C+ ++g++++C eh00656 493 TCEhnhrQCSRH-----AFCTdyatGFCChCQ-SKFYGngkHCL 530 SM00682: domain 1 of 1, from 531 to 763: score 487.3, E = 7.4e-142 *->aeGePqRVsGkvsGvlnvgsSevPvaFenadLhsYvVsseGRayTaI +eG+ +RV+GkvsG+l+vg ++Pv+F+++dLh+Y+V+++GRayTaI eh00656 531 PEGASHRVNGKVSGHLHVG--HTPVHFTDVDLHAYIVGNDGRAYTAI 575 skiPsplGaaLlpllpIgGttiGWLFAkeqggavYNGFqLTGGvFtrete s+iP+p+++aLlpl+pIgG+ +GWLFA+e++g++ NGF+L+G++Ft+++e eh00656 576 SHIPQPAAQALLPLTPIGGL-FGWLFALEKPGSE-NGFSLAGAAFTHDME 623 vtFteggenlrikQtfeGlVSDehgyLkvkieistFRGrVPavaagatVi vtF++g+e++ri+Qt+eGl D+++yL++k++i+ G+VP+v+a++t++ eh00656 624 VTFYPGEETVRITQTAEGL--DPENYLSIKTNIQ---GQVPYVPANFTAH 668 ipDYtEeYtytRPGELKgpsvltsssTreytvtEPerddGarnqTysYtv i++Y+E+Y+y+ +s++ts+s+r+y++t +Ga+nqT+sY++ eh00656 669 ISPYKELYHYS-------DSTVTSTSSRDYSLT-----FGAINQTWSYRI 706 dQtItyeeCehrdaelplpttqqLkVsrVfadYneeEgvLRfaakNfAtR +Q+Ity+ C+h+++++++pttqqL+V+rVfa+Yn+eE+vLRfa++N eh00656 707 HQNITYQVCRHAPRHPSFPTTQQLNVDRVFALYNDEERVLRFAVTN---- 752 svGpvdessac<-* ++Gpv+e+s++ eh00656 753 QIGPVKEDSDP 763 SM00179: domain 1 of 4, from 765 to 806: score 5.9, E = 0.31 *->DiDEC.....pCqnGGptgtCiN..vGSYrC.CppGyt...rnCe<- ++ C ++++ C+ + +C+ ++ Y+C+C Gy++++rnC+ eh00656 765 PVNPCydgshMCDTTA---RCHPgtGVDYTCeCASGYQgdgRNCV 806 * eh00656 - - SM00181: domain 2 of 5, from 768 to 806: score 23.4, E = 0.031 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<- +C ++++ C+ ++C+++++ ytC+C+ Gy+g++++C+ eh00656 768 PCYdgshMCDTT-----ARCHpgtgvDYTCeCA-SGYQGdgrNCV 806 * eh00656 - - SM00179: domain 2 of 4, from 807 to 849: score 49.9, E = 3.3e-10 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< D +EC ++ + C++++ +CiN +GSYrC+C+ Gy+ +++++C+ eh00656 807 DENECatgfhRCGPNS---VCINlPGSYRCeCRSGYEfaddrHTCI 849 -* eh00656 - - SM00181: domain 3 of 5, from 810 to 849: score 29.9, E = 0.00034 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eCa++ + C+++ +Ci+ ++sy+C+C+ Gy+ +++++C+ eh00656 810 ECAtgfhRCGPNS-----VCInlpgSYRCeCR-SGYEFaddrhTCI 849 -* eh00656 - - SM00179: domain 3 of 4, from 856 to 897: score 3.6, E = 0.6 *->DiDEC.....pCqnGGptgtCiN..vGSYrC.CppGyt...rnCe<- + C+++++ C + G +++C+ ++ ++C C pGy +++++C+ eh00656 856 --NPCedgshTCAPAG-QARCVHhgGSTFSCaCLPGYAgdgHQCT 897 * eh00656 - - SM00181: domain 4 of 5, from 857 to 897: score 23.0, E = 0.042 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<- +C+++++ C + g ++C+++++++++C C pGy g++++C eh00656 857 PCEdgshTCAPAG---QARCVhhggsTFSCaCL-PGYAGdghQCT 897 * eh00656 - - SM00179: domain 4 of 4, from 898 to 936: score 52.3, E = 6.5e-11 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt...rnCe<-* D+DEC+++ C++ + tC N++GS++C+C+pGy++++ +C+ eh00656 898 DVDECsenRCHPAA---TCYNtPGSFSCrCQPGYYgdgFQCI 936 SM00181: domain 5 of 5, from 901 to 936: score 31.0, E = 0.00017 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe<-* eC+++ C++ +tC ++++s++C+C+ pGy+g++ +C+ eh00656 901 ECSenRCHPA-----ATCYntpgSFSCrCQ-PGYYGdgfQCI 936 SM00211: domain 1 of 2, from 966 to 1015: score 86.9, E = 2.4e-21 *->iPqCdedGnYepvQCdgssggkRGqCWCVDpasGreipGtRtepGia iPqCde Gn+ p+QC+gs+ G+CWCVD +G e+pGt+t+pG eh00656 966 IPQCDEQGNFLPLQCHGST----GFCWCVD-PDGHEVPGTQTPPG-- 1005 pggdpdCpspc<-* ++p+C + eh00656 1006 -STPPHCGPSP 1015 SM00211: domain 2 of 2, from 1046 to 1094: score 83.4, E = 2.8e-20 *->iPqCdedGnYepvQCdgssggkRGqCWCVDpasGreipGtRtepGia +PqCd G++ p+QC+g+s +CWCVD ++Gre++GtR++ eh00656 1046 VPQCDDLGHFIPLQCHGKS----DFCWCVD-KDGREVQGTRSQ---- 1083 pggdpdCpspc<-* pg++p+C ++ eh00656 1084 PGTTPACIPTV 1094 SM00135: domain 1 of 5, from 1140 to 1182: score 32.3, E = 6.5e-05 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl ++l+s + + + g +++D+ e+ ++YWtD++ + +I+ra l eh00656 1140 KTLLSLHGsIIVG-IDYDCRER--MVYWTDVAGR------TISRAGL 1177 dGtnr<-* + + eh00656 1178 ELGAE 1182 SM00135: domain 2 of 5, from 1184 to 1226: score 63.6, E = 2.4e-14 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl +++v+sgl +P+g lA+D+i++ +YWtD+ ld kIe+a l eh00656 1184 ETIVNSGLiSPEG-LAIDHIRR--TMYWTDSVLD------KIESALL 1221 dGtnr<-* dG++r eh00656 1222 DGSER 1226 SM00135: domain 3 of 5, from 1227 to 1271: score 69.4, E = 4.6e-16 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl +vl+ ++l +Pr+ +AvD+i+g +lYWtDw ++++ kIe ++l eh00656 1227 KVLFYTDLvNPRA-IAVDPIRG--NLYWTDWNREAP----KIETSSL 1266 dGtnr<-* dG nr eh00656 1267 DGENR 1271 SM00135: domain 4 of 5, from 1272 to 1314: score 54.3, E = 1.6e-11 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl r+l++++++ P+g l++D++++ +l+W+D+g++ k e+ eh00656 1272 RILINTDIgLPNG-LTFDPFSK--LLCWADAGTK------KLECTLP 1309 dGtnr<-* dGt+r eh00656 1310 DGTGR 1314 SM00135: domain 5 of 5, from 1315 to 1355: score 1.2, E = 1.2e+02 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl ++++++l+ P + + +++ Y tDw++d ++ ++++ eh00656 1315 -RVIQNNLkYP---FSIVSYAD--HFYHTDWRRD-----GVVSVNKH 1350 dGtnr<-* G++ eh00656 1351 SGQFT 1355 //