hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-05291674/chunk_1/iprscan-20090618-05291674.nocrc
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Query sequence: eh00660
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00041.11.fs Fibronectin type III domain                     40.9    4.2e-11   4
PF00041.11.ls Fibronectin type III domain                     43.7    5.8e-10   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00041.11.ls   1/3     438   522 ..     1    84 []    14.6   0.0051
PF00041.11.ls   2/3     527   614 ..     1    84 []    22.7   0.0008
PF00041.11.fs   3/4     543   614 ..    13    84 .]    23.7  3.5e-06
PF00041.11.ls   3/3     626   730 ..     1    84 []     6.5    0.033

Alignments of top-scoring domains:
PF00041.11.ls: domain 1 of 3, from 438 to 522: score 14.6, E = 0.0051
                   *->PsaPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkngg
                      P+  + ++ ++ ++ ++tl W+p ++ + ng+i  Y+v + ++ +++
     eh00660   438    PDVWRIVSLEP-GNHTVTLFWKPLSklhANGKILFYNVVV-ENLDKP 482  

                   e...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-*
                   ++++ +++  p ++t  +l        Y+++V+A n +G +p S   
     eh00660   483 SsseLHSIPAPANSTKLILD----RCSYQICVIANNSVGaSPAS    522  

PF00041.11.ls: domain 2 of 3, from 527 to 614: score 22.7, E = 0.0008
                   *->PsaPtnltvtdv....tstsltlsWspPtgngpitgYevtyRqpkng
                         P+n  v++ +  +t+  ++lsW+p    g++ gY v++ ++  +
     eh00660   527    SADPENKEVEEEriagTEGGFSLSWKPQ--PGDVIGYVVDW-CDH-T 569  

                   ge....wkeltvpgttt.sytltg.LkPgteYtvrVqAvnggGGpeS<-*
                   ++  ++ ++++v ++tt++++ t+  +Pg++Y +r++ ++++  +     
     eh00660   570 QDvlgdFQWKNVGPNTTsTVISTDaFRPGVRYDFRIYGLSTK--RIA    614  

PF00041.11.fs: domain 3 of 4, from 543 to 614: score 23.7, E = 3.5e-06
                   *->tstsltlsWspPtgngpitgYevtyRqpkngge....wkeltvpgtt
                      t+  ++lsW+p    g++ gY v++ ++  +++  ++ ++++v ++t
     eh00660   543    TEGGFSLSWKPQ--PGDVIGYVVDW-CDH-TQDvlgdFQWKNVGPNT 585  

                   t.sytltg.LkPgteYtvrVqAvnggGGpeS<-*
                   t++++ t+  +Pg++Y +r++ ++++  +     
     eh00660   586 TsTVISTDaFRPGVRYDFRIYGLSTK--RIA    614  

PF00041.11.ls: domain 3 of 3, from 626 to 730: score 6.5, E = 0.033
                   *->PsaP.tnltvtdv..tstsltlsWspPt...gngpitgYevtyRqpk
                        aP+ n++v   + ts s+tlsW+  ++++  g i+gY v + ++k
     eh00660   626    ELAPsDNPHVLVDtlTSHSFTLSWKDYStesQPGFIQGYHVYL-KSK 671  

                   ngge................wkeltvpgtttsytltgLkPgteYtvrVqA
                      + +++ ++   +++++ +k ++  + +   ++ +LkP + Y++ ++ 
     eh00660   672 -ARQchprfekavlsdgsecCKYKIDNPEEKALIVDNLKPESFYEFFITP 720  

                   vnggG.GpeS<-*
                    + +G+Gp     
     eh00660   721 FTSAGeGPSA    730  

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