hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-05291674/chunk_1/iprscan-20090618-05291674.nocrc
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Query sequence: eh00660
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00060                                                  79.7    3.5e-19   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00060    1/4     337   417 ..     1    69 []    15.3      3.6
SM00060    2/4     435   519 ..     1    69 []    16.3      2.8
SM00060    3/4     527   614 ..     1    69 []    11.9      8.9
SM00060    4/4     626   727 ..     1    69 []    36.2  4.4e-06

Alignments of top-scoring domains:
SM00060: domain 1 of 4, from 337 to 417: score 15.3, E = 3.6
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr....
                         P     + +++v++t       +  +W+  +  ++ ++  + + 
     eh00660   337    LMNPFS---VNFENVNAT------NAIMTWKVHsirnnFTYLCqiel 374  

                   ..................ytltgLkPgaepwteYefrVrAvngndaGeg<
                    ++++  + +++ +++++y l+ L+P     teY  rVr+ ++       
     eh00660   375 hgegkmmqynvsikvngeYFLSELEPA----TEYMARVRCADA--SHFW  417  

                   -*
                     
     eh00660     -    -    

SM00060: domain 2 of 4, from 435 to 519: score 16.3, E = 2.8
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                        +P      r+++  + ++    +vtl W+p ++ + +++i+ Y +
     eh00660   435    SEAPDV---WRIVSLEPGNH----TVTLFWKPLsklhangkILFYNv 474  

                   ...................ytltgLkPgaepwteYefrVrAvngndaGeg
                   ++++ +++++++  + + ++  t L  ++     Y++ V+A n+  +G +
     eh00660   475 vvenldkpssselhsipapANSTKLILDR---CSYQICVIANNS--VGAS 519  

                   <-*
                      
     eh00660     -     -    

SM00060: domain 3 of 4, from 527 to 614: score 11.9, E = 8.9
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP...ivgYr......
                         P+n  e++ + +  t++     ++lsW+p +++++gY++++ + 
     eh00660   527    SADPEN-KEVEEERIAGTEG----GFSLSWKPQpgdVIGYVvdwcdh 568  

                   .....................ytltgLkPgaepwteYefrVrAvngndaG
                   ++++ ++ +++++++++++++   +  +Pg     +Y fr++  +   + 
     eh00660   569 tqdvlgdfqwknvgpnttstvISTDAFRPG----VRYDFRIYGLST--KR 612  

                   eg<-*
                   +    
     eh00660   613 IA    614  

SM00060: domain 4 of 4, from 626 to 727: score 36.2, E = 4.4e-06
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                        +Ps+++++ v   ts+      s+tlsW+  + ++ ++ i gY++
     eh00660   626    ELAPSDNPHVLVDTLTSH------SFTLSWKDYstesqpgfIQGYHv 666  

                   ....................................ytltgLkPgaepwt
                     +++ ++  ++ ++ + +++++  + + ++++++  ++++LkP     +
     eh00660   667 ylkskarqchprfekavlsdgsecckykidnpeekaLIVDNLKPE----S 712  

                   eYefrVrAvngndaGeg<-*
                    Yef ++ +++  aGeg   
     eh00660   713 FYEFFITPFTS--AGEG    727  

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