hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-05422609/chunk_1/iprscan-20090618-05422609.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eh00685 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02158.6.fs Neuregulin family 505.7 4.1e-150 1 PF02158.6.ls Neuregulin family 269.7 5.3e-78 1 PF00047.15.fs Immunoglobulin domain 34.5 1.1e-08 1 PF00047.15.ls Immunoglobulin domain 36.4 9.2e-08 1 PF00008.17.fs EGF-like domain 30.6 1.1e-07 1 PF07679.6.fs Immunoglobulin I-set domain 25.1 9.9e-07 1 PF00008.17.ls EGF-like domain 32.5 1.4e-06 1 PF07679.6.ls Immunoglobulin I-set domain 27.1 5.9e-06 1 PF07686.7.ls Immunoglobulin V-set domain 14.2 0.0018 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.ls 1/1 170 264 .. 1 141 [] 14.2 0.0018 PF07679.6.fs 1/1 170 263 .. 1 96 [] 25.1 9.9e-07 PF07679.6.ls 1/1 170 263 .. 1 96 [] 27.1 5.9e-06 PF00047.15.ls 1/1 184 248 .. 1 65 [] 36.4 9.2e-08 PF00047.15.fs 1/1 184 248 .. 1 65 [] 34.5 1.1e-08 PF00008.17.fs 1/1 316 355 .. 1 38 [] 30.6 1.1e-07 PF00008.17.ls 1/1 316 355 .. 1 38 [] 32.5 1.4e-06 PF02158.6.ls 1/1 369 596 .] 1 406 [] 269.7 5.3e-78 PF02158.6.fs 1/1 369 557 .. 1 193 [. 505.7 4.1e-150 Alignments of top-scoring domains: PF07686.7.ls: domain 1 of 1, from 170 to 264: score 14.2, E = 0.0018 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + + + + s a G ++ L+C s + + eh00685 170 PPRLKE--MK------------SQESAAGSKLVLRCETS---SEY-- 197 ssgtfsiyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvtl ++ ++ W++++ + + ++++ ++g+ + eh00685 198 --SSLRFKWFKNgNEL--------------NRKNKPQNIKIQKKPGKSE- 230 sgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* L+I++++l+DsG Y C v++ ++ + + t++ eh00685 231 ----------LRINKASLADSGEYMCKVISK-LGNDSASANITIV 264 PF07679.6.fs: domain 1 of 1, from 170 to 263: score 25.1, E = 9.9e-07 *->PkFtqkpkdveVqeGesarfeCkVtGt.PePtVsWfKdGqplssvl. P +++ k++e + G+ +++ C+ + + WfK+G +l+ + eh00685 170 PPRLKEMKSQESAAGSKLVLRCETSSEySSLRFKWFKNGNELNR-Kn 215 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt p + +k+ + g + L+I+++ +DsG+Y C++ + G ++asa+ t eh00685 216 KP-QNIKIQKKP--GKSELRINKASLADSGEYMCKVISKLGNDSASANIT 262 V<-* + eh00685 263 I 263 PF07679.6.ls: domain 1 of 1, from 170 to 263: score 27.1, E = 5.9e-06 *->PkFtqkpkdveVqeGesarfeCkVtGt.PePtVsWfKdGqplssvl. P +++ k++e + G+ +++ C+ + + WfK+G +l+ + eh00685 170 PPRLKEMKSQESAAGSKLVLRCETSSEySSLRFKWFKNGNELNR-Kn 215 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt p + +k+ + g + L+I+++ +DsG+Y C++ + G ++asa+ t eh00685 216 KP-QNIKIQKKP--GKSELRINKASLADSGEYMCKVISKLGNDSASANIT 262 V<-* + eh00685 263 I 263 PF00047.15.ls: domain 1 of 1, from 184 to 248: score 36.4, E = 9.2e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty G+++ L+C++s + ++ ++ W++ng +l + ++ ++ ++ + + eh00685 184 GSKLVLRCETS-SEYSSLRFKWFKNGNeLNrKNKPQnIKIQKKPGKS 229 qtsLtitnvtpeDggtYtCvv<-* L+i++++ D+g+Y+C v eh00685 230 E--LRINKASLADSGEYMCKV 248 PF00047.15.fs: domain 1 of 1, from 184 to 248: score 34.5, E = 1.1e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty G+++ L+C++s + ++ ++ W++ng +l + ++ ++ ++ + + eh00685 184 GSKLVLRCETS-SEYSSLRFKWFKNGNeLNrKNKPQnIKIQKKPGKS 229 qtsLtitnvtpeDggtYtCvv<-* L+i++++ D+g+Y+C v eh00685 230 E--LRINKASLADSGEYMCKV 248 PF00008.17.fs: domain 1 of 1, from 316 to 355: score 30.6, E = 1.1e-07 *->Cspnn.gpCsngGtCvdtp.....ggytCeCppGyfllytGkrC<-* C++ ++ C ngG+C ++ + ++++ y C+C+pG +tG rC eh00685 316 CAEKEkTFCVNGGECFMVKdlsnpSRYLCKCQPG----FTGARC 355 PF00008.17.ls: domain 1 of 1, from 316 to 355: score 32.5, E = 1.4e-06 *->Cspnn.gpCsngGtCvdtp.....ggytCeCppGyfllytGkrC<-* C++ ++ C ngG+C ++ + ++++ y C+C+pG +tG rC eh00685 316 CAEKEkTFCVNGGECFMVKdlsnpSRYLCKCQPG----FTGARC 355 PF02158.6.ls: domain 1 of 1, from 369 to 596: score 269.7, E = 5.3e-78 *->AEELYqKRvLtitGiCidLLvvGimCvvdAYCKtKKqRkKLnDRLRq AEELYqKRvLtitGiCi+LLvvGimCvv AYCKtKKqRkKL+DRLRq eh00685 369 AEELYQKRVLTITGICIALLVVGIMCVV-AYCKTKKQRKKLHDRLRQ 414 sLRerrknlvnkdnrPHnPknPPPrknvqLvnqYvsKnvissEHvvEREv sLR++r n++n++n+PH+P nPPP +nvqLvnqYvsKnvissEH+vERE eh00685 415 SLRSERNNMMNIANGPHHP-NPPP-ENVQLVNQYVSKNVISSEHIVEREA 462 EtsFstsHYtstaHHsttvtqtPsHsWsnGlsEsviseksysvivtssvE EtsFstsHYtstaHHsttvtqtPsHsWsnG++Es++s +s+sviv+ssvE eh00685 463 ETSFSTSHYTSTAHHSTTVTQTPSHSWSNGHTESILS-ESHSVIVMSSVE 511 nsRHssPaGgPRGRLnGlGGprddnsyLRHARetPDsYRDsPHsERYvsA nsRHssP+GgPRGRLnG GGpr+ ns+LRHARetPDsYRDsPHsER eh00685 512 NSRHSSPTGGPRGRLNGTGGPRECNSFLRHARETPDSYRDSPHSERH--- 558 mttPARmsPveFktPisPKsPplEtsPPvsslavsvPsvAvsPFvEEERP + E eh00685 559 ------------------------------------------NLIAE--- 563 LLLvsPPRLREKkYDrktpqkthhkqlnsyHHnPaHdsssLPPsPLRivE LR k r k + ql + H sss+P eh00685 564 --------LRRNKAHR---SKCMQIQLSATH----LRSSSIP-------- 590 DEEYEttqEYEsvlEPvKKlvnsRRaKRtKPnGHianRLElDsdsssvss H+ L eh00685 591 ---------------------------------HLGFIL----------- 596 tsEsEtEDERvGEetPFLsiqnPLAAsLEvAslyRlAesRtnPasRFstq eh00685 - -------------------------------------------------- - EELqARLss<-* eh00685 - --------- - PF02158.6.fs: domain 1 of 1, from 369 to 557: score 505.7, E = 4.1e-150 *->AEELYqKRvLtitGiCidLLvvGimCvvdAYCKtKKqRkKLnDRLRq AEELYqKRvLtitGiCi+LLvvGimCvv AYCKtKKqRkKL+DRLRq eh00685 369 AEELYQKRVLTITGICIALLVVGIMCVV-AYCKTKKQRKKLHDRLRQ 414 sLRerrknlvnkdnrPHnPknPPPrknvqLvnqYvsKnvissEHvvEREv sLR++r n++n++n+PH+P nPPP +nvqLvnqYvsKnvissEH+vERE eh00685 415 SLRSERNNMMNIANGPHHP-NPPP-ENVQLVNQYVSKNVISSEHIVEREA 462 EtsFstsHYtstaHHsttvtqtPsHsWsnGlsEsviseksysvivtssvE EtsFstsHYtstaHHsttvtqtPsHsWsnG++Es++s +s+sviv+ssvE eh00685 463 ETSFSTSHYTSTAHHSTTVTQTPSHSWSNGHTESILS-ESHSVIVMSSVE 511 nsRHssPaGgPRGRLnGlGGprddnsyLRHARetPDsYRDsPHsER<-* nsRHssP+GgPRGRLnG GGpr+ ns+LRHARetPDsYRDsPHsER eh00685 512 NSRHSSPTGGPRGRLNGTGGPRECNSFLRHARETPDSYRDSPHSER 557 //