hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-17033608/chunk_1/iprscan-20080808-17033608.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eh00696 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02145.6.fs Rap/ran-GAP 397.0 5.5e-120 1 PF02145.6.ls Rap/ran-GAP 398.8 7.2e-117 1 PF03542.6.fs Tuberin 208.0 1.4e-60 2 PF03542.6.ls Tuberin 194.9 1.7e-55 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03542.6.ls 1/1 585 939 .. 1 333 [] 194.9 1.7e-55 PF03542.6.fs 1/2 585 678 .. 1 96 [. 41.9 2.6e-12 PF03542.6.fs 2/2 726 939 .. 119 333 .] 166.1 2.1e-48 PF02145.6.ls 1/1 1529 1712 .. 1 192 [] 398.8 7.2e-117 PF02145.6.fs 1/1 1529 1712 .. 1 192 [] 397.0 5.5e-120 Alignments of top-scoring domains: PF03542.6.ls: domain 1 of 1, from 585 to 939: score 194.9, E = 1.7e-55 *->lVrsEsEieDIIllVDGLvklFivKLyRLPslHAlkvysiLidlLEl + eD+ +V GL + KLy LP HA +vy +L+ + l eh00696 585 VAAYSASLEDVKTAVLGLLVILQTKLYTLPASHATRVYEMLVSHIQL 631 HYeRPkvlenvvvvRYkIFAWllKARANGSyHIGYPdPedtevVkFShYL HY+ l + +R + F ll RA G P+ d+ vV+FS+Y eh00696 632 HYKHSYTLPIASSIRLQAFDFLLLLRADSLHRLGLPN-KDG-VVRFSPYC 679 Gld.........................sPllPaanlTaISIkRvCklIV d +++++++++++++ +++++++++ P Pa l + ++ eh00696 680 VCDymepergsekktsgplspptgppgpAPAGPAVRLGSVPYSLLFRVLL 729 lCLkedkDyeViQLVlrELPkVlQNKALvQG..NDvdeLArTLlRmYtDK CLk + D++V+ LVl LP l K L+ ++ vd L L m eh00696 730 QCLKQESDWKVLKLVLGRLPESLRYKVLIFTspCSVDQLCSALCSMLSGP 779 inLEKLqVSaNkakkmsDEymeLvLPAlaSLviYHesLdtntqknIIdAL LE+L + + +D + v P l L+ YH Ld +q+ + L eh00696 780 KTLERLRGAPEGFSR-TD-LHLAVVPVLTALISYHNYLDKTKQREMVYCL 827 ksrllsriasvCIrtlTILlLEMPEaLMrKlaDlLLelSKMsdTkalAlP ++l+ r as C+ l I EMP + l+ l +l s T +A+P eh00696 828 EQGLIHRCASQCVVALSICSVEMPDIIIKALPVLVVKLTHISATASMAVP 877 VLEFLSlLIllskflFaNFTsrtyMyVfAisLPyTkPfRYDHYTVSLAHy LEFLS+L l+ +l+ NF y VfAisLPyT+P + Y V LAH+ eh00696 878 LLEFLSTLARLP-HLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHH 926 VvAaWFlKCKLel<-* V+A WF++C+L+ eh00696 927 VIAMWFIRCRLPF 939 PF03542.6.fs: domain 1 of 2, from 585 to 678: score 41.9, E = 2.6e-12 *->lVrsEsEieDIIllVDGLvklFivKLyRLPslHAlkvysiLidlLEl + eD+ +V GL + KLy LP HA +vy +L+ + l eh00696 585 VAAYSASLEDVKTAVLGLLVILQTKLYTLPASHATRVYEMLVSHIQL 631 HYeRPkvlenvvvvRYkIFAWllKARANGSyHIGYPdPedtevVkFShY< HY+ l + +R + F ll RA G P+ d+ vV+FS+Y eh00696 632 HYKHSYTLPIASSIRLQAFDFLLLLRADSLHRLGLPN-KDG-VVRFSPY 678 -* eh00696 - - PF03542.6.fs: domain 2 of 2, from 726 to 939: score 166.1, E = 2.1e-48 *->klIVlCLkedkDyeViQLVlrELPkVlQNKALvQG..NDvdeLArTL ++ CLk + D++V+ LVl LP l K L+ ++ vd L L eh00696 726 RVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTspCSVDQLCSAL 772 lRmYtDKinLEKLqVSaNkakkmsDEymeLvLPAlaSLviYHesLdtntq m LE+L + + +D + v P l L+ YH Ld +q eh00696 773 CSMLSGPKTLERLRGAPEGFSR-TD-LHLAVVPVLTALISYHNYLDKTKQ 820 knIIdALksrllsriasvCIrtlTILlLEMPEaLMrKlaDlLLelSKMsd + + L ++l+ r as C+ l I EMP + l+ l +l s eh00696 821 REMVYCLEQGLIHRCASQCVVALSICSVEMPDIIIKALPVLVVKLTHISA 870 TkalAlPVLEFLSlLIllskflFaNFTsrtyMyVfAisLPyTkPfRYDHY T +A+P LEFLS+L l+ +l+ NF y VfAisLPyT+P + Y eh00696 871 TASMAVPLLEFLSTLARLP-HLYRNFAAEQYASVFAISLPYTNPSKFNQY 919 TVSLAHyVvAaWFlKCKLel<-* V LAH+V+A WF++C+L+ eh00696 920 IVCLAHHVIAMWFIRCRLPF 939 PF02145.6.ls: domain 1 of 1, from 1529 to 1712: score 398.8, E = 7.2e-117 *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth ++sNe++s++++eFLt+LG++++LKd++pDkvY+GGLDv+g+d G++ eh00696 1529 ILSNEHGSYRYTEFLTGLGRLIELKDCQPDKVYLGGLDVCGED-GQF 1574 svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek ++++++++m+++FH++Tl+P++++dk+++++KRH+GND+V+IV+++sGe eh00696 1575 TYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLGNDFVSIVYNDSGE- 1623 pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg +F+++tI+++F++V+viV++ld+e++ +Vs+++rkD++++++t++++ eh00696 1624 DFKLGTIKGQFNFVHVIVTPLDYECN----LVSLQCRKDMEGLVDTSVAK 1669 avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-* +v+d+n++F+++++a+++N++++vh++r+++++++++ k++a+L eh00696 1670 IVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPS--KWIARL 1712 PF02145.6.fs: domain 1 of 1, from 1529 to 1712: score 397.0, E = 5.5e-120 *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth ++sNe++s++++eFLt+LG++++LKd++pDkvY+GGLDv+g+d G++ eh00696 1529 ILSNEHGSYRYTEFLTGLGRLIELKDCQPDKVYLGGLDVCGED-GQF 1574 svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek ++++++++m+++FH++Tl+P++++dk+++++KRH+GND+V+IV+++sGe eh00696 1575 TYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLGNDFVSIVYNDSGE- 1623 pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg +F+++tI+++F++V+viV++ld+e++ +Vs+++rkD++++++t++++ eh00696 1624 DFKLGTIKGQFNFVHVIVTPLDYECN----LVSLQCRKDMEGLVDTSVAK 1669 avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-* +v+d+n++F+++++a+++N++++vh++r+++++++++ k++a+L eh00696 1670 IVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPS--KWIARL 1712 //