hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-05490301/chunk_1/iprscan-20090618-05490301.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eh00724 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02196.6.ls Raf-like Ras-binding domain 212.0 1.2e-60 2 PF02196.6.fs Raf-like Ras-binding domain 208.2 1.7e-59 2 PF00615.9.ls Regulator of G protein signaling domain 108.0 2.6e-29 1 PF00615.9.fs Regulator of G protein signaling domain 106.1 9.4e-29 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 66.3 5.6e-18 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 68.2 2.4e-17 1 PF02188.7.fs GoLoco motif 42.1 3.2e-12 1 PF02188.7.ls GoLoco motif 44.1 4.5e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.ls 1/1 46 120 .. 1 86 [] 68.2 2.4e-17 PF00595.14.fs 1/1 46 120 .. 1 86 [] 66.3 5.6e-18 PF00615.9.fs 1/1 739 856 .. 1 143 [] 106.1 9.4e-29 PF00615.9.ls 1/1 739 856 .. 1 143 [] 108.0 2.6e-29 PF02196.6.fs 1/2 986 1056 .. 1 77 [] 114.5 2.9e-31 PF02196.6.ls 1/2 986 1056 .. 1 77 [] 116.4 7.6e-32 PF02196.6.ls 2/2 1058 1128 .. 1 77 [] 95.6 1.3e-25 PF02196.6.fs 2/2 1058 1128 .. 1 77 [] 93.7 5e-25 PF02188.7.fs 1/1 1211 1233 .. 1 23 [] 42.1 3.2e-12 PF02188.7.ls 1/1 1211 1233 .. 1 23 [] 44.1 4.5e-10 Alignments of top-scoring domains: PF00595.14.ls: domain 1 of 1, from 46 to 120: score 68.2, E = 2.4e-17 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v + + +r g Gf+++g + +++ s v++Gs+a+ +g L eh00724 46 SVEVAR--GRAGYGFTLSG------QAPCVLSCVMRGSPADFVG--L 82 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +aGDqIl+vN ++ + she++v+++ +++g +++++++ eh00724 83 RAGDQILAVNEINVKKASHEDVVKLIGKCSG-VLHMVIA 120 PF00595.14.fs: domain 1 of 1, from 46 to 120: score 66.3, E = 5.6e-18 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v + + +r g Gf+++g + +++ s v++Gs+a+ +g L eh00724 46 SVEVAR--GRAGYGFTLSG------QAPCVLSCVMRGSPADFVG--L 82 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +aGDqIl+vN ++ + she++v+++ +++g +++++++ eh00724 83 RAGDQILAVNEINVKKASHEDVVKLIGKCSG-VLHMVIA 120 PF00615.9.fs: domain 1 of 1, from 739 to 856: score 106.1, E = 9.4e-29 *->sfeklldkqpiGrllFreFLktefsepkenieFwlaveEyekte..s sfe ll ++p+G ++F +FL++efse eni Fw+a+e ++ + ++ eh00724 739 SFERLL-QDPVGVRYFSDFLRKEFSE--ENILFWQACEYFNHVPahD 782 paekrpdkaredevlAaAyGIydeFispeapkfevnldsevvestqqnlk + ++++ +are I+ +F+ ++a + vn+ds++ + ++ ++ eh00724 783 K-KELSYRARE---------IFSKFLCSKATT-PVNIDSQA--QLADDVL 819 eavevddllkdlqptkdlFeeaqreiytlmrgDsfprFLeSdyflrfL<- +a p +d F e q +i++lm+ Ds+ rFL+S+ +++ + eh00724 820 RA-----------PHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQECI 856 * eh00724 - - PF00615.9.ls: domain 1 of 1, from 739 to 856: score 108.0, E = 2.6e-29 *->sfeklldkqpiGrllFreFLktefsepkenieFwlaveEyekte..s sfe ll ++p+G ++F +FL++efse eni Fw+a+e ++ + ++ eh00724 739 SFERLL-QDPVGVRYFSDFLRKEFSE--ENILFWQACEYFNHVPahD 782 paekrpdkaredevlAaAyGIydeFispeapkfevnldsevvestqqnlk + ++++ +are I+ +F+ ++a + vn+ds++ + ++ ++ eh00724 783 K-KELSYRARE---------IFSKFLCSKATT-PVNIDSQA--QLADDVL 819 eavevddllkdlqptkdlFeeaqreiytlmrgDsfprFLeSdyflrfL<- +a p +d F e q +i++lm+ Ds+ rFL+S+ +++ + eh00724 820 RA-----------PHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQECI 856 * eh00724 - - PF02196.6.fs: domain 1 of 2, from 986 to 1056: score 114.5, E = 2.9e-31 *->ktirvhLPnnqrsvVevRpGmtvrDaLakalkkRGLnpsacvVrrsg k++++hLP+++++vV+v++G++++D+L+++++++G+n++a++++++g eh00724 986 KHCCIHLPDGTSCVVAVKAGFSIKDILSGLCERHGINGAAADLFLVG 1032 dpqegekkpLdldtdissLpgPeElvvEnl<-* ++kpL+l++d+s+L++ ++l++E++ eh00724 1033 -----GDKPLVLHQDSSILES-RDLRLEKR 1056 PF02196.6.ls: domain 1 of 2, from 986 to 1056: score 116.4, E = 7.6e-32 *->ktirvhLPnnqrsvVevRpGmtvrDaLakalkkRGLnpsacvVrrsg k++++hLP+++++vV+v++G++++D+L+++++++G+n++a++++++g eh00724 986 KHCCIHLPDGTSCVVAVKAGFSIKDILSGLCERHGINGAAADLFLVG 1032 dpqegekkpLdldtdissLpgPeElvvEnl<-* ++kpL+l++d+s+L++ ++l++E++ eh00724 1033 -----GDKPLVLHQDSSILES-RDLRLEKR 1056 PF02196.6.ls: domain 2 of 2, from 1058 to 1128: score 95.6, E = 1.3e-25 *->ktirvhLPnnqrsvVevRpGmtvrDaLakalkkRGLnpsacvVrrsg ++++++P+n++++++++p+++v+++L+++++++GL+ s++ Vr+sg eh00724 1058 LFRLDLVPINRSVGLKAKPTKPVTEVLRPVVARYGLDLSGLLVRLSG 1104 dpqegekkpLdldtdissLpgPeElvvEnl<-* ek+pLdl+++issL+g +++v+E++ eh00724 1105 -----EKEPLDLGAPISSLDG-QRVVLEEK 1128 PF02196.6.fs: domain 2 of 2, from 1058 to 1128: score 93.7, E = 5e-25 *->ktirvhLPnnqrsvVevRpGmtvrDaLakalkkRGLnpsacvVrrsg ++++++P+n++++++++p+++v+++L+++++++GL+ s++ Vr+sg eh00724 1058 LFRLDLVPINRSVGLKAKPTKPVTEVLRPVVARYGLDLSGLLVRLSG 1104 dpqegekkpLdldtdissLpgPeElvvEnl<-* ek+pLdl+++issL+g +++v+E++ eh00724 1105 -----EKEPLDLGAPISSLDG-QRVVLEEK 1128 PF02188.7.fs: domain 1 of 1, from 1211 to 1233: score 42.1, E = 3.2e-12 *->dEelfdLLlrvQssRmDDQRael<-* Ee+f+L++++Qs+R+DDQR++l eh00724 1211 AEEFFELISKAQSNRADDQRGLL 1233 PF02188.7.ls: domain 1 of 1, from 1211 to 1233: score 44.1, E = 4.5e-10 *->dEelfdLLlrvQssRmDDQRael<-* Ee+f+L++++Qs+R+DDQR++l eh00724 1211 AEEFFELISKAQSNRADDQRGLL 1233 //