hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-05490301/chunk_1/iprscan-20090618-05490301.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: eh00724
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00455                                                 197.1    1.6e-54   2
SM00315                                                 159.3    3.9e-43   1
SM00462                                                 121.7    8.2e-32   1
SM00228                                                  75.3    7.7e-18   1
SM00390                                                  44.3    1.6e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/1      54   123 ..     1    80 []    75.3  7.7e-18
SM00462    1/1     249   398 ..     1   156 []   121.7  8.2e-32
SM00315    1/1     739   856 ..     1   121 []   159.3  3.9e-43
SM00455    1/2     986  1056 ..     1    76 []   107.4  1.6e-27
SM00455    2/2    1058  1128 ..     1    76 []    89.7  3.4e-22
SM00390    1/1    1211  1233 ..     1    23 []    44.3  1.6e-08

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 54 to 123: score 75.3, E = 7.7e-18
                   *->gglGfsivg..gifvssvvpGspAakaGrkslglLkvGDvIleVNGe
                      +g+Gf+++g+ +++ s v++GspA+  G      L++GD+Il+VN  
     eh00724    54    AGYGFTLSGqaPCVLSCVMRGSPADFVG------LRAGDQILAVNE- 93   

                   tsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   ++v+ ++he++v+l+ k++g     ++++++  g    
     eh00724    94 INVKKASHEDVVKLIGKCSG-----VLHMVIAEGV    123  

SM00462: domain 1 of 1, from 249 to 398: score 121.7, E = 8.2e-32
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklrsekkkpq
                      +  v++ V YLGs+e+p+++ S++++++lq+++ ++r+lr+e+k ++
     eh00724   249    ILNVAMIVGYLGSIELPSTS-SNLESDSLQAIRGCMRRLRAEQKIHS 294  

                   kvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrwntGgdgstdd
                    v++++++d+v l+++k + v+ae+p+++++f+a++p           dd
     eh00724   295 LVTMKIMHDCVQLSTDKAG-VVAEYPAEKLAFSAVCP-----------DD 332  

                   drvFgyiardpgssgSn....rgtsrfaCHVFrcekaa...aedialaig
                    r+Fg++++ ++++gS+ ++++g++r++CHVF+ +++  +++ ++  a++
     eh00724   333 RRFFGLVTMQTNDDGSLaqeeEGALRTSCHVFMVDPDLfnhKIHQGIARR 382  

                   qaFqvayelklkarse<-*
                     F+++++ +++ + e   
     eh00724   383 FGFECTADPDTNGCLE    398  

SM00315: domain 1 of 1, from 739 to 856: score 159.3, E = 3.9e-43
                   *->sleklLendpiGrllFreFLksefseykenleFWlaveefkkaed..
                      s+e lL +dp+G+++F +FL++efse  en++FW a+e f + + ++
     eh00724   739    SFERLL-QDPVGVRYFSDFLRKEFSE--ENILFWQACEYFNHVPAhd 782  

                   .eersskAreIydkylspeapkesevnldsdtreeieenlee.pppdlFd
                   ++e+s+ AreI++k+l ++a++  +vn+ds   +++++++   p+pd+F 
     eh00724   783 kKELSYRAREIFSKFLCSKATT--PVNIDS--QAQLADDVLRaPHPDMFK 828  

                   eAqrevyellekdsyprFLkSdyYlrfL<-*
                   e q ++++l++ dsy+rFLkS++Y+++    
     eh00724   829 EQQLQIFNLMKFDSYTRFLKSPLYQECI    856  

SM00455: domain 1 of 2, from 986 to 1056: score 107.4, E = 1.6e-27
                   *->ktcrvhLPdnqrtvVkvRPGktvrDaLakaLkkRgLnpeacvVrlrg
                      k+c++hLPd++++vV+v++G++++D+L+++++++g+n +a++++l+g
     eh00724   986    KHCCIHLPDGTSCVVAVKAGFSIKDILSGLCERHGINGAAADLFLVG 1032 

                   dpqeGekkpldlnqdissLagqElvveel<-*
                        ++kpl+l+qd+s+L++++l++e++   
     eh00724  1033 -----GDKPLVLHQDSSILESRDLRLEKR    1056 

SM00455: domain 2 of 2, from 1058 to 1128: score 89.7, E = 3.4e-22
                   *->ktcrvhLPdnqrtvVkvRPGktvrDaLakaLkkRgLnpeacvVrlrg
                       ++++++P+n+++  k++P+k+v+++L+++++++gL+ +   Vrl+g
     eh00724  1058    LFRLDLVPINRSVGLKAKPTKPVTEVLRPVVARYGLDLSGLLVRLSG 1104 

                   dpqeGekkpldlnqdissLagqElvveel<-*
                        ek+pldl+++issL+gq++v+ee+   
     eh00724  1105 -----EKEPLDLGAPISSLDGQRVVLEEK    1128 

SM00390: domain 1 of 1, from 1211 to 1233: score 44.3, E = 1.6e-08
                   *->dEdlfdlllrmQssRmDDQRcel<-*
                       E++f+l++++Qs+R+DDQR++l   
     eh00724  1211    AEEFFELISKAQSNRADDQRGLL    1233 

//