# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oej00427.fasta.nr -Q ej00427.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ej00427, 551 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6812908 sequences Expectation_n fit: rho(ln(x))= 4.8738+/-0.000194; mu= 13.3027+/- 0.011 mean_var=81.1711+/-16.182, 0's: 46 Z-trim: 98 B-trim: 4908 in 2/62 Lambda= 0.142355 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|30580642|sp|Q9Y4K3.1|TRAF6_HUMAN TNF receptor-a ( 522) 3654 760.4 0 gi|21410269|gb|AAH31052.1| TNF receptor-associated ( 522) 3646 758.8 7.6e-217 gi|114637055|ref|XP_001154065.1| PREDICTED: TNF re ( 522) 3645 758.6 8.8e-217 gi|109106736|ref|XP_001114764.1| PREDICTED: simila ( 522) 3604 750.1 3e-214 gi|38173732|gb|AAH60705.1| Tnf receptor-associated ( 530) 3289 685.5 9e-195 gi|30580620|sp|P70196|TRAF6_MOUSE TNF receptor-ass ( 530) 3278 683.2 4.3e-194 gi|149022731|gb|EDL79625.1| Tnf receptor-associate ( 530) 3230 673.3 4e-191 gi|126332585|ref|XP_001362208.1| PREDICTED: simila ( 522) 3093 645.2 1.2e-182 gi|118091500|ref|XP_421089.2| PREDICTED: similar t ( 524) 2872 599.8 5.4e-169 gi|119588527|gb|EAW68121.1| TNF receptor-associate ( 296) 2036 427.9 1.8e-117 gi|156530444|gb|ABU75303.1| TNF receptor-associate ( 541) 1888 397.7 3.8e-108 gi|73587333|gb|AAI02523.1| TNF receptor-associated ( 542) 1874 394.9 2.8e-107 gi|93278159|gb|ABF06558.1| TNF receptor-associated ( 542) 1870 394.0 4.9e-107 gi|149409636|ref|XP_001509071.1| PREDICTED: simila ( 544) 1687 356.5 1e-95 gi|126332583|ref|XP_001362131.1| PREDICTED: simila ( 540) 1664 351.7 2.7e-94 gi|194217834|ref|XP_001914971.1| PREDICTED: simila ( 508) 1636 346.0 1.4e-92 gi|89273399|emb|CAJ82470.1| TNF receptor-associate ( 558) 1385 294.4 4.8e-77 gi|51950093|gb|AAH82342.1| TNF receptor-associated ( 558) 1367 290.7 6.3e-76 gi|119903330|ref|XP_001249654.1| PREDICTED: simila ( 203) 1344 285.6 8.2e-75 gi|49522101|gb|AAH75143.1| MGC81955 protein [Xenop ( 556) 1337 284.6 4.5e-74 gi|80477229|gb|AAI08563.1| MGC131035 protein [Xeno ( 556) 1324 281.9 2.9e-73 gi|75674194|dbj|BAE44508.1| TRAF6 [Xenopus laevis] ( 556) 1323 281.7 3.3e-73 gi|156227972|gb|EDO48773.1| predicted protein [Nem ( 482) 1126 241.2 4.5e-61 gi|47230748|emb|CAF99941.1| unnamed protein produc ( 565) 1126 241.3 5e-61 gi|22219212|pdb|1LB5|A Chain A, Traf6-Rank Complex ( 160) 1116 238.6 8.7e-61 gi|47716905|gb|AAT37634.1| TNF-receptor associated ( 542) 1119 239.8 1.3e-60 gi|94732654|emb|CAK11108.1| novel protein containi ( 542) 1118 239.6 1.5e-60 gi|22219211|pdb|1LB4|A Chain A, Traf6 Apo Structur ( 159) 1109 237.2 2.3e-60 gi|32766399|gb|AAH55214.1| TNF receptor-associated ( 542) 1113 238.6 3.1e-60 gi|115605763|gb|ABJ15863.1| TNF receptor-associate ( 576) 1109 237.8 5.7e-60 gi|124295373|gb|ABN04154.1| tumor necrosis factor ( 642) 882 191.2 6.7e-46 gi|119903332|ref|XP_001250607.1| PREDICTED: simila ( 125) 786 170.8 1.8e-40 gi|63034003|gb|AAY27978.1| tumor necrosis factor r ( 555) 752 164.4 6.6e-38 gi|51258319|gb|AAH80018.1| MGC82199 protein [Xenop ( 470) 659 145.3 3.3e-32 gi|49899052|gb|AAH76768.1| MGC83213 protein [Xenop ( 470) 654 144.2 6.7e-32 gi|26334265|dbj|BAC30850.1| unnamed protein produc ( 174) 649 142.8 6.9e-32 gi|126313917|ref|XP_001368795.1| PREDICTED: simila ( 470) 644 142.2 2.8e-31 gi|49899984|gb|AAH76992.1| MGC89613 protein [Xenop ( 470) 642 141.8 3.7e-31 gi|30580636|sp|Q9BUZ4|TRAF4_HUMAN TNF receptor-ass ( 470) 641 141.6 4.3e-31 gi|61372388|gb|AAX43834.1| TNF receptor-associated ( 471) 641 141.6 4.3e-31 gi|951277|emb|CAA56491.1| cystein rich domain asso ( 470) 638 141.0 6.5e-31 gi|154425549|gb|AAI51615.1| TRAF4 protein [Bos tau ( 470) 631 139.5 1.8e-30 gi|149053499|gb|EDM05316.1| Tnf receptor associate ( 470) 629 139.1 2.4e-30 gi|7274404|gb|AAF44757.1|AF233449_1 TNF receptor a ( 470) 629 139.1 2.4e-30 gi|32698426|emb|CAD89005.1| TRAF4 protein [Danio r ( 470) 628 138.9 2.7e-30 gi|114654884|ref|XP_001164665.1| PREDICTED: TNF re ( 485) 626 138.5 3.7e-30 gi|115814147|ref|XP_789029.2| PREDICTED: similar t ( 529) 620 137.3 9.2e-30 gi|47227801|emb|CAG08964.1| unnamed protein produc ( 471) 617 136.6 1.3e-29 gi|38304068|emb|CAE54432.1| TNF-receptor associate ( 276) 605 133.9 5e-29 gi|156225095|gb|EDO45915.1| predicted protein [Nem ( 422) 604 133.9 7.7e-29 >>gi|30580642|sp|Q9Y4K3.1|TRAF6_HUMAN TNF receptor-assoc (522 aa) initn: 3654 init1: 3654 opt: 3654 Z-score: 4057.1 bits: 760.4 E(): 0 Smith-Waterman score: 3654; 100.000% identity (100.000% similar) in 522 aa overlap (30-551:1-522) 10 20 30 40 50 60 ej0042 AESCGWWGSPALLVRPPRALERASDNQVTMSLLNCENSCGSSQSESDCCVAMASSCSAVT ::::::::::::::::::::::::::::::: gi|305 MSLLNCENSCGSSQSESDCCVAMASSCSAVT 10 20 30 70 80 90 100 110 120 ej0042 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK 40 50 60 70 80 90 130 140 150 160 170 180 ej0042 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH 100 110 120 130 140 150 190 200 210 220 230 240 ej0042 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA 160 170 180 190 200 210 250 260 270 280 290 300 ej0042 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR 220 230 240 250 260 270 310 320 330 340 350 360 ej0042 MLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 MLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELK 280 290 300 310 320 330 370 380 390 400 410 420 ej0042 RTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 RTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM 340 350 360 370 380 390 430 440 450 460 470 480 ej0042 RLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 RLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMD 400 410 420 430 440 450 490 500 510 520 530 540 ej0042 AKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 AKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRRE 460 470 480 490 500 510 550 ej0042 GFQPRSTDAGV ::::::::::: gi|305 GFQPRSTDAGV 520 >>gi|21410269|gb|AAH31052.1| TNF receptor-associated fac (522 aa) initn: 3646 init1: 3646 opt: 3646 Z-score: 4048.2 bits: 758.8 E(): 7.6e-217 Smith-Waterman score: 3646; 99.808% identity (99.808% similar) in 522 aa overlap (30-551:1-522) 10 20 30 40 50 60 ej0042 AESCGWWGSPALLVRPPRALERASDNQVTMSLLNCENSCGSSQSESDCCVAMASSCSAVT ::::::::::: ::::::::::::::::::: gi|214 MSLLNCENSCGFSQSESDCCVAMASSCSAVT 10 20 30 70 80 90 100 110 120 ej0042 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK 40 50 60 70 80 90 130 140 150 160 170 180 ej0042 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH 100 110 120 130 140 150 190 200 210 220 230 240 ej0042 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA 160 170 180 190 200 210 250 260 270 280 290 300 ej0042 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR 220 230 240 250 260 270 310 320 330 340 350 360 ej0042 MLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 MLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELK 280 290 300 310 320 330 370 380 390 400 410 420 ej0042 RTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 RTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM 340 350 360 370 380 390 430 440 450 460 470 480 ej0042 RLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 RLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMD 400 410 420 430 440 450 490 500 510 520 530 540 ej0042 AKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 AKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRRE 460 470 480 490 500 510 550 ej0042 GFQPRSTDAGV ::::::::::: gi|214 GFQPRSTDAGV 520 >>gi|114637055|ref|XP_001154065.1| PREDICTED: TNF recept (522 aa) initn: 3645 init1: 3645 opt: 3645 Z-score: 4047.1 bits: 758.6 E(): 8.8e-217 Smith-Waterman score: 3645; 99.617% identity (100.000% similar) in 522 aa overlap (30-551:1-522) 10 20 30 40 50 60 ej0042 AESCGWWGSPALLVRPPRALERASDNQVTMSLLNCENSCGSSQSESDCCVAMASSCSAVT :::::::::::::::::::::::::::::.: gi|114 MSLLNCENSCGSSQSESDCCVAMASSCSAAT 10 20 30 70 80 90 100 110 120 ej0042 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK 40 50 60 70 80 90 130 140 150 160 170 180 ej0042 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH 100 110 120 130 140 150 190 200 210 220 230 240 ej0042 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA 160 170 180 190 200 210 250 260 270 280 290 300 ej0042 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR 220 230 240 250 260 270 310 320 330 340 350 360 ej0042 MLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELK ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MLAQAVHSLSLIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELK 280 290 300 310 320 330 370 380 390 400 410 420 ej0042 RTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM 340 350 360 370 380 390 430 440 450 460 470 480 ej0042 RLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMD 400 410 420 430 440 450 490 500 510 520 530 540 ej0042 AKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRRE 460 470 480 490 500 510 550 ej0042 GFQPRSTDAGV ::::::::::: gi|114 GFQPRSTDAGV 520 >>gi|109106736|ref|XP_001114764.1| PREDICTED: similar to (522 aa) initn: 3604 init1: 3604 opt: 3604 Z-score: 4001.6 bits: 750.1 E(): 3e-214 Smith-Waterman score: 3604; 98.084% identity (99.617% similar) in 522 aa overlap (30-551:1-522) 10 20 30 40 50 60 ej0042 AESCGWWGSPALLVRPPRALERASDNQVTMSLLNCENSCGSSQSESDCCVAMASSCSAVT :::::::::::::::::::::::::::::.: gi|109 MSLLNCENSCGSSQSESDCCVAMASSCSAAT 10 20 30 70 80 90 100 110 120 ej0042 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|109 KDDSVGGTASTGNLSSSFMEDIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK 40 50 60 70 80 90 130 140 150 160 170 180 ej0042 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH 100 110 120 130 140 150 190 200 210 220 230 240 ej0042 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA ::::::::.:::::::::::::::::::::::::::::::::: .::::::::::::::: gi|109 QAHCEFALVDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAALVAFEDKEIHDQNCPLA 160 170 180 190 200 210 250 260 270 280 290 300 ej0042 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR 220 230 240 250 260 270 310 320 330 340 350 360 ej0042 MLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELK ::::::::::.::::::.::::::::::::::::::::::::::::::::::: :::::: gi|109 MLAQAVHSLSLIPDSGYVSEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSTYVSELK 280 290 300 310 320 330 370 380 390 400 410 420 ej0042 RTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM 340 350 360 370 380 390 430 440 450 460 470 480 ej0042 RLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMD 400 410 420 430 440 450 490 500 510 520 530 540 ej0042 AKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRRE :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AKPDLLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRRE 460 470 480 490 500 510 550 ej0042 GFQPRSTDAGV ::::::::.:: gi|109 GFQPRSTDSGV 520 >>gi|38173732|gb|AAH60705.1| Tnf receptor-associated fac (530 aa) initn: 3333 init1: 1837 opt: 3289 Z-score: 3651.9 bits: 685.5 E(): 9e-195 Smith-Waterman score: 3289; 87.925% identity (95.472% similar) in 530 aa overlap (30-551:1-530) 10 20 30 40 50 60 ej0042 AESCGWWGSPALLVRPPRALERASDNQVTMSLLNCENSCGSSQSESDCCVAMASSCSAVT ::::::::::::::: ::::.:::.::::.. gi|381 MSLLNCENSCGSSQSSSDCCAAMAASCSAAV 10 20 30 70 80 90 100 110 120 ej0042 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK :::::.:.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|381 KDDSVSGSASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK 40 50 60 70 80 90 130 140 150 160 170 180 ej0042 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH ::::::::::::::::::::::::::::::::::::::: :::::.:::.:::::::::: gi|381 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLTVKCPNKGCLQKMELRHLEDH 100 110 120 130 140 150 190 200 210 220 230 240 ej0042 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA :.::::::..:::::::::: ..: ::..::::::::: :::.:::.:.::::::.:::: gi|381 QVHCEFALVNCPQCQRPFQKCQVNTHIIEDCPRRQVSCVNCAVSMAYEEKEIHDQSCPLA 160 170 180 190 200 210 250 260 270 280 290 300 ej0042 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR :.:::::.::::::::::::::::::::::::::.::::::::::::::::::::: ::: gi|381 NIICEYCGTILIREQMPNHYDLDCPTAPIPCTFSVFGCHEKMQRNHLARHLQENTQLHMR 220 230 240 250 260 270 310 320 330 340 350 ej0042 MLAQAVHSLSVI--------PDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQ .::::::.... :. : : :..:::.:::.::::::::::::::::::: gi|381 LLAQAVHNVNLALRPCDAASPSRGCRPEDPNYEETIKQLESRLVRQDHQIRELTAKMETQ 280 290 300 310 320 330 360 370 380 390 400 410 ej0042 SMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTG ::::.:::::::::::::::.::::::::::::::::::::: ::::.:::::::::::: gi|381 SMYVGELKRTIRTLEDKVAEMEAQQCNGIYIWKIGNFGMHLKSQEEERPVVIHSPGFYTG 340 350 360 370 380 390 420 430 440 450 460 470 ej0042 KPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVR .:::::::::::::::::::::::::::::::::::::::::::::::::::::::: .: gi|381 RPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEALIR 400 410 420 430 440 450 480 490 500 510 520 530 ej0042 QNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRF :::::.::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|381 QNHEEVMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQGTFIKDDTLLVRCEVSTRF 460 470 480 490 500 510 540 550 ej0042 DMGSLRREGFQPRSTDAGV :::.::.:::::::::::: gi|381 DMGGLRKEGFQPRSTDAGV 520 530 >>gi|30580620|sp|P70196|TRAF6_MOUSE TNF receptor-associa (530 aa) initn: 3322 init1: 1833 opt: 3278 Z-score: 3639.7 bits: 683.2 E(): 4.3e-194 Smith-Waterman score: 3278; 87.547% identity (95.472% similar) in 530 aa overlap (30-551:1-530) 10 20 30 40 50 60 ej0042 AESCGWWGSPALLVRPPRALERASDNQVTMSLLNCENSCGSSQSESDCCVAMASSCSAVT ::::::::::::::: ::::.:::.::::.. gi|305 MSLLNCENSCGSSQSSSDCCAAMAASCSAAV 10 20 30 70 80 90 100 110 120 ej0042 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK :::::.:.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 KDDSVSGSASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK 40 50 60 70 80 90 130 140 150 160 170 180 ej0042 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH ::::::::::::::::::::::::::::::::::::::: :::::.:::.:::::::::: gi|305 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLTVKCPNKGCLQKMELRHLEDH 100 110 120 130 140 150 190 200 210 220 230 240 ej0042 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA :.::::::..:::::::::: ..: ::..::::::::: :::.:::.:.::::::.:::: gi|305 QVHCEFALVNCPQCQRPFQKCQVNTHIIEDCPRRQVSCVNCAVSMAYEEKEIHDQSCPLA 160 170 180 190 200 210 250 260 270 280 290 300 ej0042 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR :.:::::.::::::::::::::::::::::::::.::::.:::::::::::::::: ::: gi|305 NIICEYCGTILIREQMPNHYDLDCPTAPIPCTFSVFGCHQKMQRNHLARHLQENTQLHMR 220 230 240 250 260 270 310 320 330 340 350 ej0042 MLAQAVHSLSVI--------PDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQ .::::::.... :. : : :..:::.:::.::::::::::::::::::: gi|305 LLAQAVHNVNLALRPCDAASPSRGCRPEDPNYEETIKQLESRLVRQDHQIRELTAKMETQ 280 290 300 310 320 330 360 370 380 390 400 410 ej0042 SMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTG ::::.:::::::::::::::.::::::::::::::.:::::: ::::.:::::::::::: gi|305 SMYVGELKRTIRTLEDKVAEMEAQQCNGIYIWKIGKFGMHLKSQEEERPVVIHSPGFYTG 340 350 360 370 380 390 420 430 440 450 460 470 ej0042 KPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVR .:::::::::::::::::::::::::::::::::::::::::::::::::::::::: .: gi|305 RPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEALIR 400 410 420 430 440 450 480 490 500 510 520 530 ej0042 QNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRF :::::.::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|305 QNHEEVMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQGTFIKDDTLLVRCEVSTRF 460 470 480 490 500 510 540 550 ej0042 DMGSLRREGFQPRSTDAGV :::.::.:::::::::::: gi|305 DMGGLRKEGFQPRSTDAGV 520 530 >>gi|149022731|gb|EDL79625.1| Tnf receptor-associated fa (530 aa) initn: 3306 init1: 1776 opt: 3230 Z-score: 3586.4 bits: 673.3 E(): 4e-191 Smith-Waterman score: 3230; 86.415% identity (94.151% similar) in 530 aa overlap (30-551:1-530) 10 20 30 40 50 60 ej0042 AESCGWWGSPALLVRPPRALERASDNQVTMSLLNCENSCGSSQSESDCCVAMASSCSAVT ::::::::::.:::: ::::.:::.::::. gi|149 MSLLNCENSCASSQSSSDCCAAMANSCSAAM 10 20 30 70 80 90 100 110 120 ej0042 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK :::::.: .::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KDDSVSGCVSTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK 40 50 60 70 80 90 130 140 150 160 170 180 ej0042 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH ::: ::::::::::::::::::::::::::::::::::: :::::.::..:::::::::: gi|149 ACITKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLTVKCPNKGCVQKMELRHLEDH 100 110 120 130 140 150 190 200 210 220 230 240 ej0042 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA :.::::::. :::::: ::: .:: ::..::::::::: :::. : .:.::::::.:::: gi|149 QVHCEFALVICPQCQRFFQKCQINKHIIEDCPRRQVSCVNCAVPMPYEEKEIHDQSCPLA 160 170 180 190 200 210 250 260 270 280 290 300 ej0042 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR :.:::::.::::::::::::::::::::.:::::.::::::::::::::::::::: ::: gi|149 NIICEYCGTILIREQMPNHYDLDCPTAPVPCTFSVFGCHEKMQRNHLARHLQENTQLHMR 220 230 240 250 260 270 310 320 330 340 350 ej0042 MLAQAVHSLSVI--------PDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQ .::::::.... :. : : :..::..::::::::::::::::::::::: gi|149 LLAQAVHNVNLSLRPCDASSPSRGCRPEDPNYEETVKQLEGRLVRQDHQIRELTAKMETQ 280 290 300 310 320 330 360 370 380 390 400 410 ej0042 SMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTG ::.:::::::::.:::::::.::::::::::::::::::::: ::::.:::::::::::: gi|149 SMHVSELKRTIRSLEDKVAEMEAQQCNGIYIWKIGNFGMHLKSQEEERPVVIHSPGFYTG 340 350 360 370 380 390 420 430 440 450 460 470 ej0042 KPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVR .:::::::::::::::::::::::::::::::::::::::::::::::::::::::: .: gi|149 RPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAVIR 400 410 420 430 440 450 480 490 500 510 520 530 ej0042 QNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRF :::::.::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|149 QNHEEVMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQGTFIKDDTLLVRCEVSTRF 460 470 480 490 500 510 540 550 ej0042 DMGSLRREGFQPRSTDAGV :::.::.:::::::::::: gi|149 DMGGLRKEGFQPRSTDAGV 520 530 >>gi|126332585|ref|XP_001362208.1| PREDICTED: similar to (522 aa) initn: 3093 init1: 3093 opt: 3093 Z-score: 3434.4 bits: 645.2 E(): 1.2e-182 Smith-Waterman score: 3093; 82.950% identity (94.061% similar) in 522 aa overlap (30-551:1-522) 10 20 30 40 50 60 ej0042 AESCGWWGSPALLVRPPRALERASDNQVTMSLLNCENSCGSSQSESDCCVAMASSCSAVT :::::::.:::.:. :::::...::.::. : gi|126 MSLLNCEDSCGTSHPESDCCAGVASACSTGT 10 20 30 70 80 90 100 110 120 ej0042 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK :::::.:.. ::: ::. ::::::::::::::::::::::::::::::::::::::::: gi|126 KDDSVNGSTIPGNLPSSLREEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK 40 50 60 70 80 90 130 140 150 160 170 180 ej0042 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH :::.:::::::::::::: ::::.::::::::::::::: ::::::::: :::::::::: gi|126 ACIVKSIRDAGHKCPVDNAILLETQLFPDNFAKREILSLTVKCPNEGCLLKMELRHLEDH 100 110 120 130 140 150 190 200 210 220 230 240 ej0042 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA :.:::::: .::::. ::.:. .. :.. .:::::::: :::: : ::.::.:::::::: gi|126 QTHCEFALAECPQCHLPFRKYLLHNHMVVECPRRQVSCVNCAAPMPFEEKEFHDQNCPLA 160 170 180 190 200 210 250 260 270 280 290 300 ej0042 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR .:.::::.:.:::::::::::.:::.::::::::::::.::: ::::::::::.: .::: gi|126 TVFCEYCSTMLIREQMPNHYDIDCPVAPIPCTFSTFGCREKMPRNHLARHLQEDTLAHMR 220 230 240 250 260 270 310 320 330 340 350 360 ej0042 MLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELK :.:::....:. . . . .::::::.:::.::: :::::::::::::::: :..:: gi|126 MMAQAIENISIAAFNPKLHQRENFQETIQQLESRLVIQDHQIRELTAKMETQSACVGDLK 280 290 300 310 320 330 370 380 390 400 410 420 ej0042 RTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM ::::::::..::.:::::::::::::.::::::: ::::::::::::::::::::::::: gi|126 RTIRTLEDRIAEMEAQQCNGIYIWKINNFGMHLKSQEEEKPVVIHSPGFYTGKPGYKLCM 340 350 360 370 380 390 430 440 450 460 470 480 ej0042 RLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMD :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 RLHLQLPSAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMD 400 410 420 430 440 450 490 500 510 520 530 540 ej0042 AKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRRE ::::::::::::::::::::::::::::.::.:::::::::::::::: ::.::.::::: gi|126 AKPELLAFQRPTIPRNPKGFGYVTFMHLQALKQRTFIKDDTLLVRCEVLTRLDMNSLRRE 460 470 480 490 500 510 550 ej0042 GFQPRSTDAGV ::::::::::: gi|126 GFQPRSTDAGV 520 >>gi|118091500|ref|XP_421089.2| PREDICTED: similar to pu (524 aa) initn: 2876 init1: 1566 opt: 2872 Z-score: 3189.1 bits: 599.8 E(): 5.4e-169 Smith-Waterman score: 2872; 76.392% identity (90.979% similar) in 521 aa overlap (30-548:1-521) 10 20 30 40 50 60 ej0042 AESCGWWGSPALLVRPPRALERASDNQVTMSLLNCENSCGSSQSESDCCVAMASSCSAVT ::::. ..:::. . .: ::.::::.::. . gi|118 MSLLHSDSSCGGRDLDSGCCTAMASACSGGA 10 20 30 70 80 90 100 110 120 ej0042 KDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK :.:::. ..::: ::: :: :::::::::::::::::::::::::::::::::::::: gi|118 KEDSVSVGSGTGNPPSSFTEETQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK 40 50 60 70 80 90 130 140 150 160 170 180 ej0042 ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH .::.::::::::::::::::::::::::::::::::::: :::::.:: ::::::::.: gi|118 GCIVKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLTVKCPNKGCCLKMELRHLEEH 100 110 120 130 140 150 190 200 210 220 230 240 ej0042 QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLA : ::.:. ..::::: ::: :.. :. ..:::::: : :::.:::.::::.:::.:::: gi|118 QLHCDFTTVECPQCQGAFQKNHLKEHMTQECPRRQVCCPNCATSMAYEDKELHDQTCPLA 160 170 180 190 200 210 250 260 270 280 290 300 ej0042 NVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMR ::.::::::.:::.::::::: ::::::.:: .:.::: ::::::.::::.:: :: ::: gi|118 NVFCEYCNTMLIRQQMPNHYDNDCPTAPVPCFYSAFGCPEKMQRNELARHMQEFTQVHMR 220 230 240 250 260 270 310 320 330 340 350 ej0042 MLAQAVHSLSVIPDSG--YISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSE :.::.....:: . .:.::.::.:::.:::::::::::::::: ::::::. ...: gi|118 MMAQSIQNISVTATNPVPFINEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAE 280 290 300 310 320 330 360 370 380 390 400 410 ej0042 LKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKL :::::: :: :..:.::::::::::::: ::. : ::::.:::.:::::::::::::: gi|118 LKRTIRDLEGKITEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGKPGYKL 340 350 360 370 380 390 420 430 440 450 460 470 ej0042 CMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEI :.:::.:::.::::::.::::::::::::::::::::::::::.::::::.: ::::::. gi|118 CLRLHIQLPSAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEV 400 410 420 430 440 450 480 490 500 510 520 530 ej0042 MDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLR :.::::::::::::: ::::::::::::::..:.::::.::::::::::: ::.:..::: gi|118 MEAKPELLAFQRPTIHRNPKGFGYVTFMHLQTLKQRTFVKDDTLLVRCEVLTRLDLNSLR 460 470 480 490 500 510 540 550 ej0042 REGFQPRSTDAGV ::::: :::: gi|118 REGFQARSTDGAA 520 >>gi|119588527|gb|EAW68121.1| TNF receptor-associated fa (296 aa) initn: 2036 init1: 2036 opt: 2036 Z-score: 2264.3 bits: 427.9 E(): 1.8e-117 Smith-Waterman score: 2036; 100.000% identity (100.000% similar) in 296 aa overlap (256-551:1-296) 230 240 250 260 270 280 ej0042 AFEDKEIHDQNCPLANVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRN :::::::::::::::::::::::::::::: gi|119 MPNHYDLDCPTAPIPCTFSTFGCHEKMQRN 10 20 30 290 300 310 320 330 340 ej0042 HLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIREL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIREL 40 50 60 70 80 90 350 360 370 380 390 400 ej0042 TAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIH 100 110 120 130 140 150 410 420 430 440 450 460 ej0042 SPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILD 160 170 180 190 200 210 470 480 490 500 510 520 ej0042 QSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVR 220 230 240 250 260 270 530 540 550 ej0042 CEVSTRFDMGSLRREGFQPRSTDAGV :::::::::::::::::::::::::: gi|119 CEVSTRFDMGSLRREGFQPRSTDAGV 280 290 551 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 17:51:06 2008 done: Fri Aug 8 17:53:33 2008 Total Scan time: 881.480 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]