hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-17533422/chunk_1/iprscan-20080808-17533422.nocrc
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Query sequence: ej00427
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02176.8.fs TRAF-type zinc finger                          133.3    4.8e-40   3
PF02176.8.ls TRAF-type zinc finger                          131.3    2.4e-36   2
PF00917.16.fs MATH domain                                     97.4    1.9e-30   1
PF00917.16.ls MATH domain                                     99.4      1e-26   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           38.4    4.5e-13   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           37.6      4e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1      99   136 ..     1    49 [.    38.4  4.5e-13
PF00097.15.ls   1/1      99   137 ..     1    50 []    37.6    4e-08
PF02176.8.ls   1/2     180   231 ..     1    60 []    43.0  9.7e-10
PF02176.8.fs   2/3     180   231 ..     1    60 []    41.1  5.7e-12
PF02176.8.ls   2/2     233   288 ..     1    60 []    88.4  2.1e-23
PF02176.8.fs   3/3     233   288 ..     1    60 []    86.4  8.9e-26
PF00917.16.fs   1/1     386   530 ..     1   150 []    97.4  1.9e-30
PF00917.16.ls   1/1     386   530 ..     1   150 []    99.4    1e-26

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 99 to 136: score 38.4, E = 4.5e-13
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ICl+ l e++      +pCgH+     fC++C+ + ++ ++  +C
     ej00427    99    CPICLMALREAV-----QTPCGHR-----FCKACIIKSIR-DAGHKC 134  

                   pl<-*
                   p+   
     ej00427   135 PV    136  

PF00097.15.ls: domain 1 of 1, from 99 to 137: score 37.6, E = 4e-08
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ICl+ l e++      +pCgH+     fC++C+ + ++ ++  +C
     ej00427    99    CPICLMALREAV-----QTPCGHR-----FCKACIIKSIR-DAGHKC 134  

                   plC<-*
                   p+    
     ej00427   135 PVD    137  

PF02176.8.ls: domain 1 of 2, from 180 to 231: score 43.0, E = 9.7e-10
                   *->HekntCPfvpvpCpnekCgvkkilRedlpdHlsedCpkrevpCpFke
                      H+  +C+f+  +Cp+  C+ +++++  ++ H+ +dCp+r+v+C +  
     ej00427   180    HQA-HCEFALMDCPQ--CQ-RPFQKFHINIHILKDCPRRQVSCDN-- 220  

                   yGCkvevkrenlQ<-*
                     C+ ++++e  +   
     ej00427   221 --CAASMAFEDKE    231  

PF02176.8.fs: domain 2 of 3, from 180 to 231: score 41.1, E = 5.7e-12
                   *->HekntCPfvpvpCpnekCgvkkilRedlpdHlsedCpkrevpCpFke
                      H+  +C+f+  +Cp+  C+ +++++  ++ H+ +dCp+r+v+C +  
     ej00427   180    HQA-HCEFALMDCPQ--CQ-RPFQKFHINIHILKDCPRRQVSCDN-- 220  

                   yGCkvevkrenlQ<-*
                     C+ ++++e  +   
     ej00427   221 --CAASMAFEDKE    231  

PF02176.8.ls: domain 2 of 2, from 233 to 288: score 88.4, E = 2.1e-23
                   *->HekntCPfvpvpCpnekCgvkkilRedlpdHlsedCpkrevpCpFke
                      H++  CP ++v+C++  C  ++++Re++p+H++ dCp++++pC+F++
     ej00427   233    HDQ-NCPLANVICEY--CN-TILIREQMPNHYDLDCPTAPIPCTFST 275  

                   yGCkvevkrenlQ<-*
                   +GC+++++r++l    
     ej00427   276 FGCHEKMQRNHLA    288  

PF02176.8.fs: domain 3 of 3, from 233 to 288: score 86.4, E = 8.9e-26
                   *->HekntCPfvpvpCpnekCgvkkilRedlpdHlsedCpkrevpCpFke
                      H++  CP ++v+C++  C  ++++Re++p+H++ dCp++++pC+F++
     ej00427   233    HDQ-NCPLANVICEY--CN-TILIREQMPNHYDLDCPTAPIPCTFST 275  

                   yGCkvevkrenlQ<-*
                   +GC+++++r++l    
     ej00427   276 FGCHEKMQRNHLA    288  

PF00917.16.fs: domain 1 of 1, from 386 to 530: score 97.4, E = 1.9e-30
                   *->iknfSkikk......egesyytspyeerfnipWrllriyrngggs.r
                      i nf +  k +++++ + ++++++y+   +++ + +r++++  + +r
     ej00427   386    IGNFGMHLKcqeeekPVVIHSPGFYTGKPGYKLC-MRLHLQLPTAqR 431  

                   hgkflglyLhClkeekdsetsenlkWsietefqlklvsdnGksirRmssv
                   ++++++l++h +++e+ds    +l+W+++  ++l+++++++   r     
     ej00427   432 CANYISLFVHTMQGEYDS----HLPWPFQGTIRLTILDQSEAPVR----- 472  

                   tlskkikdainnshtFdkptkgeGwgksGykkFisWddleddyrgylvdD
                   +++ +i da++++ +F++pt+ +  +++Gy++F+ ++ l    r++++dD
     ej00427   473 QNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDD 520  

                   siiiEaeVkI<-*
                   ++ + +eV     
     ej00427   521 TLLVRCEVST    530  

PF00917.16.ls: domain 1 of 1, from 386 to 530: score 99.4, E = 1e-26
                   *->iknfSkikk......egesyytspyeerfnipWrllriyrngggs.r
                      i nf +  k +++++ + ++++++y+   +++ + +r++++  + +r
     ej00427   386    IGNFGMHLKcqeeekPVVIHSPGFYTGKPGYKLC-MRLHLQLPTAqR 431  

                   hgkflglyLhClkeekdsetsenlkWsietefqlklvsdnGksirRmssv
                   ++++++l++h +++e+ds    +l+W+++  ++l+++++++   r     
     ej00427   432 CANYISLFVHTMQGEYDS----HLPWPFQGTIRLTILDQSEAPVR----- 472  

                   tlskkikdainnshtFdkptkgeGwgksGykkFisWddleddyrgylvdD
                   +++ +i da++++ +F++pt+ +  +++Gy++F+ ++ l    r++++dD
     ej00427   473 QNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDD 520  

                   siiiEaeVkI<-*
                   ++ + +eV     
     ej00427   521 TLLVRCEVST    530  

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