hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-05560135/chunk_1/iprscan-20090618-05560135.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ej00442
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00010.16.ls Helix-loop-helix DNA-binding domain             79.9    7.4e-21   1
PF00010.16.fs Helix-loop-helix DNA-binding domain             77.9    2.6e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1     192   244 ..     1    53 []    77.9  2.6e-20
PF00010.16.ls   1/1     192   244 ..     1    53 []    79.9  7.4e-21

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 192 to 244: score 77.9, E = 2.6e-20
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      rR   n rER R +++N af+eLr+l+Pt++p+kKlsK eiLrlA +
     ej00442   192    RRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 238  

                   YIksLq<-*
                   YI++L    
     ej00442   239 YINFLA    244  

PF00010.16.ls: domain 1 of 1, from 192 to 244: score 79.9, E = 7.4e-21
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      rR   n rER R +++N af+eLr+l+Pt++p+kKlsK eiLrlA +
     ej00442   192    RRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 238  

                   YIksLq<-*
                   YI++L    
     ej00442   239 YINFLA    244  

//