hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-06021005/chunk_1/iprscan-20090618-06021005.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ej00450 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01846.10.ls FF domain 374.5 1.6e-109 6 PF01846.10.fs FF domain 363.6 2.9e-106 6 PF00397.16.ls WW domain 124.4 2.9e-34 3 PF00397.16.fs WW domain 118.4 1.9e-32 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00397.16.fs 1/3 137 166 .. 1 30 [] 41.0 1.7e-10 PF00397.16.ls 1/3 137 166 .. 1 30 [] 43.0 9.5e-10 PF00397.16.ls 2/3 414 443 .. 1 30 [] 43.6 6.2e-10 PF00397.16.fs 2/3 414 443 .. 1 30 [] 41.6 1.1e-10 PF00397.16.ls 3/3 513 542 .. 1 30 [] 37.8 3.4e-08 PF00397.16.fs 3/3 513 542 .. 1 30 [] 35.8 4.6e-09 PF01846.10.fs 1/6 644 692 .. 1 64 [] 48.0 2.9e-11 PF01846.10.ls 1/6 644 692 .. 1 64 [] 49.8 8.7e-12 PF01846.10.ls 2/6 710 759 .. 1 64 [] 53.2 7.9e-13 PF01846.10.fs 2/6 710 759 .. 1 64 [] 51.4 2.7e-12 PF01846.10.fs 3/6 777 826 .. 1 64 [] 71.8 2.1e-18 PF01846.10.ls 3/6 777 826 .. 1 64 [] 73.5 6.1e-19 PF01846.10.ls 4/6 881 932 .. 1 64 [] 52.2 1.6e-12 PF01846.10.fs 4/6 881 932 .. 1 64 [] 50.4 5.7e-12 PF01846.10.fs 5/6 939 990 .. 1 64 [] 64.3 3.6e-16 PF01846.10.ls 5/6 939 990 .. 1 64 [] 66.1 1e-16 PF01846.10.ls 6/6 997 1057 .. 1 64 [] 79.6 8.8e-21 PF01846.10.fs 6/6 997 1057 .. 1 64 [] 77.7 3.4e-20 Alignments of top-scoring domains: PF00397.16.fs: domain 1 of 3, from 137 to 166: score 41.0, E = 1.7e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* ++ W+e ++pdG++YYyN T+++ W+kP ej00450 137 TEEIWVENKTPDGKVYYYNARTRESAWTKP 166 PF00397.16.ls: domain 1 of 3, from 137 to 166: score 43.0, E = 9.5e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* ++ W+e ++pdG++YYyN T+++ W+kP ej00450 137 TEEIWVENKTPDGKVYYYNARTRESAWTKP 166 PF00397.16.ls: domain 2 of 3, from 414 to 443: score 43.6, E = 6.2e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* + W+e++++dG++YYyN T +++WekP ej00450 414 AVSEWTEYKTADGKTYYYNNRTLESTWEKP 443 PF00397.16.fs: domain 2 of 3, from 414 to 443: score 41.6, E = 1.1e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* + W+e++++dG++YYyN T +++WekP ej00450 414 AVSEWTEYKTADGKTYYYNNRTLESTWEKP 443 PF00397.16.ls: domain 3 of 3, from 513 to 542: score 37.8, E = 3.4e-08 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* +W+++++ d r+++yN+ T+ + W++P ej00450 513 PGTPWCVVWTGDERVFFYNPTTRLSMWDRP 542 PF00397.16.fs: domain 3 of 3, from 513 to 542: score 35.8, E = 4.6e-09 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* +W+++++ d r+++yN+ T+ + W++P ej00450 513 PGTPWCVVWTGDERVFFYNPTTRLSMWDRP 542 PF01846.10.fs: domain 1 of 6, from 644 to 692: score 48.0, E = 2.9e-11 *->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial ++++F+ +L e+ v+++ stW++ +k+ Dpry+ l ej00450 644 ARMKQFKDMLLERGVSAF----------STWEKELHKIVFDPRYLLL 680 dsesylksereqlFedy<-* + er+q+F++y ej00450 681 NPK-----ERKQVFDQY 692 PF01846.10.ls: domain 1 of 6, from 644 to 692: score 49.8, E = 8.7e-12 *->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial ++++F+ +L e+ v+++ stW++ +k+ Dpry+ l ej00450 644 ARMKQFKDMLLERGVSAF----------STWEKELHKIVFDPRYLLL 680 dsesylksereqlFedy<-* + er+q+F++y ej00450 681 NPK-----ERKQVFDQY 692 PF01846.10.ls: domain 2 of 6, from 710 to 759: score 53.2, E = 7.9e-13 *->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial +ake+F+++++e k++++ +t+se k+ +D r++a+ ej00450 710 QAKEDFKKMMEEAKFNPR----------ATFSEFAAKHAKDSRFKAI 746 dsesylksereqlFedy<-* ++++ +re lF+++ ej00450 747 EKMK----DREALFNEF 759 PF01846.10.fs: domain 2 of 6, from 710 to 759: score 51.4, E = 2.7e-12 *->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial +ake+F+++++e k++++ +t+se k+ +D r++a+ ej00450 710 QAKEDFKKMMEEAKFNPR----------ATFSEFAAKHAKDSRFKAI 746 dsesylksereqlFedy<-* ++++ +re lF+++ ej00450 747 EKMK----DREALFNEF 759 PF01846.10.fs: domain 3 of 6, from 777 to 826: score 71.8, E = 2.1e-18 *->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial k+k +F+eLL++h+ +++ s+Ws++k+k+++Dpry+a+ ej00450 777 KIKSDFFELLSNHHLDSQ----------SRWSKVKDKVESDPRYKAV 813 dsesylksereqlFedy<-* ds+s +re+lF++y ej00450 814 DSSS----MREDLFKQY 826 PF01846.10.ls: domain 3 of 6, from 777 to 826: score 73.5, E = 6.1e-19 *->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial k+k +F+eLL++h+ +++ s+Ws++k+k+++Dpry+a+ ej00450 777 KIKSDFFELLSNHHLDSQ----------SRWSKVKDKVESDPRYKAV 813 dsesylksereqlFedy<-* ds+s +re+lF++y ej00450 814 DSSS----MREDLFKQY 826 PF01846.10.ls: domain 4 of 6, from 881 to 932: score 52.2, E = 1.6e-12 *->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial +a+++F+ LL+++ +++ +Ws+++++l++D+r+ ej00450 881 EAIQNFKALLSDMVRSSD----------VSWSDTRRTLRKDHRWESG 917 dsesylksereqlFedy<-* + ++ ++e+e+lF+++ ej00450 918 SLLE--REEKEKLFNEH 932 PF01846.10.fs: domain 4 of 6, from 881 to 932: score 50.4, E = 5.7e-12 *->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial +a+++F+ LL+++ +++ +Ws+++++l++D+r+ ej00450 881 EAIQNFKALLSDMVRSSD----------VSWSDTRRTLRKDHRWESG 917 dsesylksereqlFedy<-* + ++ ++e+e+lF+++ ej00450 918 SLLE--REEKEKLFNEH 932 PF01846.10.fs: domain 5 of 6, from 939 to 990: score 64.3, E = 3.6e-16 *->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial k +e+Fr+LL+e++ it + stW+e+kk+++eDpr+i+ ej00450 939 KKREHFRQLLDETSAITLT---------STWKEVKKIIKEDPRCIKF 976 dsesylksereqlFedy<-* +s++ +++++ Fe+y ej00450 977 SSSD---RKKQREFEEY 990 PF01846.10.ls: domain 5 of 6, from 939 to 990: score 66.1, E = 1e-16 *->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial k +e+Fr+LL+e++ it + stW+e+kk+++eDpr+i+ ej00450 939 KKREHFRQLLDETSAITLT---------STWKEVKKIIKEDPRCIKF 976 dsesylksereqlFedy<-* +s++ +++++ Fe+y ej00450 977 SSSD---RKKQREFEEY 990 PF01846.10.ls: domain 6 of 6, from 997 to 1057: score 79.6, E = 8.8e-21 *->kakeaFreLLkehkvityak.klliktsnstWseakkklseDpryia +ak++Fr+LLke+k+ity ++k+li++s+++ +++ k+l++D+ry+ ej00450 997 TAKADFRTLLKETKFITY-RsKKLIQESDQHLKDVEKILQNDKRYLV 1042 ldsesylksereqlFedy<-* ld+++ +er++l+ +y ej00450 1043 LDCVP---EERRKLIVAY 1057 PF01846.10.fs: domain 6 of 6, from 997 to 1057: score 77.7, E = 3.4e-20 *->kakeaFreLLkehkvityak.klliktsnstWseakkklseDpryia +ak++Fr+LLke+k+ity ++k+li++s+++ +++ k+l++D+ry+ ej00450 997 TAKADFRTLLKETKFITY-RsKKLIQESDQHLKDVEKILQNDKRYLV 1042 ldsesylksereqlFedy<-* ld+++ +er++l+ +y ej00450 1043 LDCVP---EERRKLIVAY 1057 //