hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-06080129/chunk_1/iprscan-20090618-06080129.nocrc
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Query sequence: ej00479
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00462                                                 301.7    5.3e-86   2
SM00456                                                  40.5    2.2e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00456    1/1     293   324 ..     1    34 []    40.5  2.2e-07
SM00462    1/2     416   560 ..     1   156 []   150.8  1.4e-40
SM00462    2/2     587   717 ..     1   156 []   150.9  1.4e-40

Alignments of top-scoring domains:
SM00456: domain 1 of 1, from 293 to 324: score 40.5, E = 2.2e-07
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      +lPpgW+++ d + G +Y++   T++tqWe+P++   
     ej00479   293    DLPPGWKRVSDIA-GTYYWHI-PTGTTQWERPVS    324  

SM00462: domain 1 of 2, from 416 to 560: score 150.8, E = 1.4e-40
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr.......
                      +e+++f V+ LG+ve++e++  lapgk++ +++++ir+l+  +++ +
     ej00479   416    PEAKCFAVRSLGWVEMAEED--LAPGKSSVAVNNCIRQLSyckndir 460  

                   ...sekkkpqkvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrw
                   ++ + +++++++ l +  d+++l+d+ +  vl+++p+ +I+++++++   
     ej00479   461 dtvGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGR--- 507  

                   ntGgdgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedial
                           d+ r F+y+ard++++        ++CHVFrc+ +a ++ia 
     ej00479   508 --------DNGRDFAYVARDKDTR-------ILKCHVFRCDTPA-KAIAT 541  

                   aigqaFqvayelklkarse<-*
                   ++++++++++ ++++a+ +   
     ej00479   542 SLHEICSKIMAERKNAKAL    560  

SM00462: domain 2 of 2, from 587 to 717: score 150.9, E = 1.4e-40
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr..sekkk
                      + +++f V+YLG+++v+++        g++ l+ ai+ l ++s k++
     ej00479   587    ELVQKFHVQYLGMLPVDKPV-------GMDILNSAIENLMtsSNKED 626  

                   pqkvilsvSsdgvklidektk.qvlaehplrrIsfcaadpqrwntGgdgs
                   + +v+++v + +v++i+ek++++vl+e+++r++sf++++           
     ej00479   627 WLSVNMNVADATVTVISEKNEeEVLVECRVRFLSFMGVG----------- 665  

                   tdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaigqaFq
                    +d+++F++i+  +++        rf+CHVF+ce+ a  ++++a+++a++
     ej00479   666 -KDVHTFAFIMDTGNQ--------RFECHVFWCEPNA-GNVSEAVQAACM 705  

                   vayelklkarse<-*
                   ++y+++l+ar++   
     ej00479   706 LRYQKCLVARPP    717  

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