hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-06145187/chunk_1/iprscan-20090618-06145187.nocrc
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Query sequence: ej00503
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF08295.2.ls  Histone deacetylase (HDAC) interacting    200.5    3.6e-57   1
PF08295.2.fs  Histone deacetylase (HDAC) interacting    198.6    1.4e-56   1
PF02671.11.ls Paired amphipathic helix repeat           178.8    1.3e-50   3
PF02671.11.fs Paired amphipathic helix repeat           172.8    8.2e-49   3

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF02671.11.fs   1/3     149   195 ..     1    47 []    72.1  1.6e-18
PF02671.11.ls   1/3     149   195 ..     1    47 []    74.1  4.1e-19
PF02671.11.ls   2/3     330   389 ..     1    47 []    52.7  1.2e-12
PF02671.11.fs   2/3     330   389 ..     1    47 []    50.7  1.2e-12
PF02671.11.ls   3/3     485   531 ..     1    47 []    52.0  1.8e-12
PF02671.11.fs   3/3     485   531 ..     1    47 []    50.0  1.9e-12
PF08295.2.fs    1/1     558   658 ..     1   102 []   198.6  1.4e-56
PF08295.2.ls    1/1     558   658 ..     1   102 []   200.5  3.6e-57

Alignments of top-scoring domains:
PF02671.11.fs: domain 1 of 3, from 149 to 195: score 72.1, E = 1.6e-18
                   *->pekYdsFlkiLnmykakridkdelfarvseLLkdhpdLlegFsaFlp
                      p +Y++Fl+i++++k + id++++++rvs+L+k+hpdL++gF++Flp
     ej00503   149    PQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLP 195  

                   <-*
                      
     ej00503     -     -    

PF02671.11.ls: domain 1 of 3, from 149 to 195: score 74.1, E = 4.1e-19
                   *->pekYdsFlkiLnmykakridkdelfarvseLLkdhpdLlegFsaFlp
                      p +Y++Fl+i++++k + id++++++rvs+L+k+hpdL++gF++Flp
     ej00503   149    PQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLP 195  

                   <-*
                      
     ej00503     -     -    

PF02671.11.ls: domain 2 of 3, from 330 to 389: score 52.7, E = 1.2e-12
                   *->pekYdsFlkiLnmykakridkd.............elfarvseLLkd
                      p++Y++Fl+iL+ y++++ ++++ +++ ++  +++e++a+v+ L+k 
     ej00503   330    PDIYKAFLEILHTYQKEQRNAKeaggnytpalteqEVYAQVARLFKN 376  

                   hpdLlegFsaFlp<-*
                    +dLl +F +Flp   
     ej00503   377 QEDLLSEFGQFLP    389  

PF02671.11.fs: domain 2 of 3, from 330 to 389: score 50.7, E = 1.2e-12
                   *->pekYdsFlkiLnmykakridkd.............elfarvseLLkd
                      p++Y++Fl+iL+ y++++ ++++ +++ ++  +++e++a+v+ L+k 
     ej00503   330    PDIYKAFLEILHTYQKEQRNAKeaggnytpalteqEVYAQVARLFKN 376  

                   hpdLlegFsaFlp<-*
                    +dLl +F +Flp   
     ej00503   377 QEDLLSEFGQFLP    389  

PF02671.11.ls: domain 3 of 3, from 485 to 531: score 52.0, E = 1.8e-12
                   *->pekYdsFlkiLnmykakridkdelfarvseLLkdhpdLlegFsaFlp
                       e+Y+ Fl++L  ++++ i+++el++ vs++L+  p+L+++F++Fl 
     ej00503   485    AEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLG 531  

                   <-*
                      
     ej00503     -     -    

PF02671.11.fs: domain 3 of 3, from 485 to 531: score 50.0, E = 1.9e-12
                   *->pekYdsFlkiLnmykakridkdelfarvseLLkdhpdLlegFsaFlp
                       e+Y+ Fl++L  ++++ i+++el++ vs++L+  p+L+++F++Fl 
     ej00503   485    AEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLG 531  

                   <-*
                      
     ej00503     -     -    

PF08295.2.fs: domain 1 of 1, from 558 to 658: score 198.6, E = 1.4e-56
                   *->nCercgPSYRlLPkseplppCSgRddLcweVLNDhWVSvPTwASEDs
                      +C+r+g SYR+LPks+ +p+C+gR+ Lc+eVLND+WVS+P w  EDs
     ej00503   558    SCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWS-EDS 603  

                   gFvhhRKNQYEEsLfrcEDERfElDrllEsnsstIklLeellekinnmsl
                   +Fv + K+QYEE ++rcEDERfElD++lE+n++tI++Le +++k++++s 
     ej00503   604 TFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSA 653  

                   eeksk<-*
                   ee++k   
     ej00503   654 EEQAK    658  

PF08295.2.ls: domain 1 of 1, from 558 to 658: score 200.5, E = 3.6e-57
                   *->nCercgPSYRlLPkseplppCSgRddLcweVLNDhWVSvPTwASEDs
                      +C+r+g SYR+LPks+ +p+C+gR+ Lc+eVLND+WVS+P w  EDs
     ej00503   558    SCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWS-EDS 603  

                   gFvhhRKNQYEEsLfrcEDERfElDrllEsnsstIklLeellekinnmsl
                   +Fv + K+QYEE ++rcEDERfElD++lE+n++tI++Le +++k++++s 
     ej00503   604 TFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSA 653  

                   eeksk<-*
                   ee++k   
     ej00503   654 EEQAK    658  

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