# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oej00563.fasta.nr -Q ej00563.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ej00563, 99 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824824 sequences Expectation_n fit: rho(ln(x))= 4.5288+/-0.00018; mu= 6.7920+/- 0.010 mean_var=56.0286+/-10.780, 0's: 33 Z-trim: 33 B-trim: 0 in 0/66 Lambda= 0.171344 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089408|dbj|BAD93148.1| ubiquitin associated p ( 99) 640 165.5 1e-39 gi|122889190|emb|CAM13516.1| ubiquitin associated ( 412) 374 100.2 1.9e-19 gi|7688705|gb|AAF67493.1|AF157327_1 AD-012 protein ( 583) 374 100.3 2.5e-19 gi|74745207|sp|Q5T6F2|UBAP2_HUMAN Ubiquitin-associ (1119) 374 100.5 4.2e-19 gi|114624451|ref|XP_528586.2| PREDICTED: ubiquitin (1119) 368 99.0 1.2e-18 gi|27764457|gb|AAO23024.1|AF276965_1 lingerer prot (1132) 320 87.2 4.4e-15 gi|81879516|sp|Q91VX2|UBAP2_MOUSE Ubiquitin-associ (1132) 320 87.2 4.4e-15 gi|73971134|ref|XP_865590.1| PREDICTED: similar to ( 267) 311 84.5 6.7e-15 gi|149045660|gb|EDL98660.1| ubiquitin-associated p (1127) 315 85.9 1e-14 gi|123229112|emb|CAM20986.1| ubiquitin-associated (1131) 313 85.4 1.5e-14 gi|73971136|ref|XP_538705.2| PREDICTED: similar to (1076) 311 84.9 2e-14 gi|73971140|ref|XP_852397.1| PREDICTED: similar to (1129) 311 84.9 2.1e-14 gi|73971138|ref|XP_865613.1| PREDICTED: similar to (1135) 311 84.9 2.1e-14 gi|149736922|ref|XP_001499522.1| PREDICTED: ubiqui (1129) 304 83.2 6.9e-14 gi|149736924|ref|XP_001499549.1| PREDICTED: simila (1135) 304 83.2 6.9e-14 gi|149409863|ref|XP_001506527.1| PREDICTED: simila (1476) 260 72.4 1.6e-10 gi|47226416|emb|CAG08432.1| unnamed protein produc ( 707) 248 69.2 7e-10 gi|80476854|gb|AAI08798.1| MGC132149 protein [Xeno ( 584) 243 67.9 1.4e-09 gi|57999533|emb|CAI45972.1| hypothetical protein [ ( 41) 217 60.6 1.6e-08 gi|126631262|gb|AAI33739.1| Zgc:158449 protein [Da (1168) 224 63.4 6.3e-08 gi|47215201|emb|CAG01408.1| unnamed protein produc ( 638) 220 62.3 7.8e-08 gi|12852011|dbj|BAB29236.1| unnamed protein produc ( 117) 200 56.8 6.5e-07 gi|6688155|emb|CAB65099.1| NICE-4 protein [Homo sa ( 137) 200 56.8 7.3e-07 gi|55665793|emb|CAH71278.1| ubiquitin associated p ( 182) 200 56.9 9.1e-07 gi|73961028|ref|XP_865259.1| PREDICTED: similar to ( 266) 201 57.3 1e-06 gi|55665794|emb|CAH71279.1| ubiquitin associated p ( 234) 200 57.0 1.1e-06 gi|55665795|emb|CAH71280.1| ubiquitin associated p ( 265) 200 57.0 1.2e-06 gi|55665796|emb|CAH71281.1| ubiquitin associated p ( 280) 200 57.0 1.3e-06 gi|55665797|emb|CAH71282.1| ubiquitin associated p ( 350) 200 57.1 1.5e-06 gi|66911473|gb|AAH97468.1| Atp8b2 protein [Rattus ( 580) 200 57.3 2.2e-06 gi|73961024|ref|XP_865225.1| PREDICTED: similar to ( 983) 201 57.7 2.8e-06 gi|73961038|ref|XP_865344.1| PREDICTED: similar to ( 994) 201 57.7 2.9e-06 gi|109465097|ref|XP_001062605.1| PREDICTED: simila ( 804) 200 57.4 2.9e-06 gi|73961042|ref|XP_865378.1| PREDICTED: similar to (1014) 201 57.7 2.9e-06 gi|73961022|ref|XP_865209.1| PREDICTED: similar to (1087) 201 57.7 3.1e-06 gi|73961032|ref|XP_865295.1| PREDICTED: similar to (1104) 201 57.7 3.1e-06 gi|73961030|ref|XP_852225.1| PREDICTED: similar to (1107) 201 57.7 3.1e-06 gi|119573605|gb|EAW53220.1| ubiquitin associated p ( 904) 200 57.4 3.2e-06 gi|119573602|gb|EAW53217.1| ubiquitin associated p ( 951) 200 57.4 3.3e-06 gi|26327735|dbj|BAC27611.1| unnamed protein produc ( 983) 200 57.4 3.4e-06 gi|148683223|gb|EDL15170.1| ubiquitin associated p ( 983) 200 57.4 3.4e-06 gi|27764461|gb|AAO23026.1|AF276967_1 lingerer prot ( 983) 200 57.4 3.4e-06 gi|109016589|ref|XP_001113998.1| PREDICTED: ubiqui ( 983) 200 57.4 3.4e-06 gi|109016602|ref|XP_001113770.1| PREDICTED: ubiqui ( 984) 200 57.4 3.4e-06 gi|119573603|gb|EAW53218.1| ubiquitin associated p ( 994) 200 57.5 3.4e-06 gi|26353768|dbj|BAC40514.1| unnamed protein produc (1014) 200 57.5 3.5e-06 gi|26348275|dbj|BAC37777.1| unnamed protein produc (1015) 200 57.5 3.5e-06 gi|27764459|gb|AAO23025.1|AF276966_1 lingerer prot (1035) 200 57.5 3.5e-06 gi|119573599|gb|EAW53214.1| ubiquitin associated p (1044) 200 57.5 3.5e-06 gi|148683228|gb|EDL15175.1| ubiquitin associated p (1067) 200 57.5 3.6e-06 >>gi|62089408|dbj|BAD93148.1| ubiquitin associated prote (99 aa) initn: 640 init1: 640 opt: 640 Z-score: 868.1 bits: 165.5 E(): 1e-39 Smith-Waterman score: 640; 100.000% identity (100.000% similar) in 99 aa overlap (1-99:1-99) 10 20 30 40 50 60 ej0056 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV 10 20 30 40 50 60 70 80 90 ej0056 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL ::::::::::::::::::::::::::::::::::::::: gi|620 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL 70 80 90 >>gi|122889190|emb|CAM13516.1| ubiquitin associated prot (412 aa) initn: 374 init1: 374 opt: 374 Z-score: 504.1 bits: 100.2 E(): 1.9e-19 Smith-Waterman score: 374; 96.667% identity (100.000% similar) in 60 aa overlap (30-89:1-60) 10 20 30 40 50 60 ej0056 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV :::::::::::::.::::::::::::::::: gi|122 MMTSVSSDHCRGAREKPQISAAQSTQPQKQV 10 20 30 70 80 90 ej0056 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL ::::::::::::::::::::::::::::. gi|122 VQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLE 40 50 60 70 80 90 >>gi|7688705|gb|AAF67493.1|AF157327_1 AD-012 protein [Ho (583 aa) initn: 374 init1: 374 opt: 374 Z-score: 502.0 bits: 100.3 E(): 2.5e-19 Smith-Waterman score: 374; 96.667% identity (100.000% similar) in 60 aa overlap (30-89:1-60) 10 20 30 40 50 60 ej0056 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV :::::::::::::.::::::::::::::::: gi|768 MMTSVSSDHCRGAREKPQISAAQSTQPQKQV 10 20 30 70 80 90 ej0056 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL ::::::::::::::::::::::::::::. gi|768 VQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLE 40 50 60 70 80 90 >>gi|74745207|sp|Q5T6F2|UBAP2_HUMAN Ubiquitin-associated (1119 aa) initn: 374 init1: 374 opt: 374 Z-score: 498.1 bits: 100.5 E(): 4.2e-19 Smith-Waterman score: 374; 96.667% identity (100.000% similar) in 60 aa overlap (30-89:1-60) 10 20 30 40 50 60 ej0056 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV :::::::::::::.::::::::::::::::: gi|747 MMTSVSSDHCRGAREKPQISAAQSTQPQKQV 10 20 30 70 80 90 ej0056 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL ::::::::::::::::::::::::::::. gi|747 VQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLE 40 50 60 70 80 90 >>gi|114624451|ref|XP_528586.2| PREDICTED: ubiquitin ass (1119 aa) initn: 368 init1: 368 opt: 368 Z-score: 490.1 bits: 99.0 E(): 1.2e-18 Smith-Waterman score: 368; 95.000% identity (98.333% similar) in 60 aa overlap (30-89:1-60) 10 20 30 40 50 60 ej0056 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV :::::::::::::.:::::::::: :::::: gi|114 MMTSVSSDHCRGAREKPQISAAQSMQPQKQV 10 20 30 70 80 90 ej0056 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL ::::::::::::::::::::::::::::. gi|114 VQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLE 40 50 60 70 80 90 >>gi|27764457|gb|AAO23024.1|AF276965_1 lingerer protein- (1132 aa) initn: 320 init1: 320 opt: 320 Z-score: 425.9 bits: 87.2 E(): 4.4e-15 Smith-Waterman score: 320; 81.667% identity (96.667% similar) in 60 aa overlap (30-89:1-60) 10 20 30 40 50 60 ej0056 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV ::::::.:.::::.::::. .:...: :::: gi|277 MMTSVSNDRCRGAREKPQMPTAHAAQSQKQV 10 20 30 70 80 90 ej0056 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL ::::::::::::::::::::::::::::. gi|277 VQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLE 40 50 60 70 80 90 >>gi|81879516|sp|Q91VX2|UBAP2_MOUSE Ubiquitin-associated (1132 aa) initn: 320 init1: 320 opt: 320 Z-score: 425.9 bits: 87.2 E(): 4.4e-15 Smith-Waterman score: 320; 81.667% identity (96.667% similar) in 60 aa overlap (30-89:1-60) 10 20 30 40 50 60 ej0056 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV ::::::.:.::::.::::. .:...: :::: gi|818 MMTSVSNDRCRGAREKPQMPTAHAAQSQKQV 10 20 30 70 80 90 ej0056 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL ::::::::::::::::::::::::::::. gi|818 VQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLE 40 50 60 70 80 90 >>gi|73971134|ref|XP_865590.1| PREDICTED: similar to ubi (267 aa) initn: 311 init1: 311 opt: 311 Z-score: 422.6 bits: 84.5 E(): 6.7e-15 Smith-Waterman score: 311; 85.000% identity (95.000% similar) in 60 aa overlap (30-89:1-60) 10 20 30 40 50 60 ej0056 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV ::::::::. :::.:: ::::.:.:: :::: gi|739 MMTSVSSDRSRGAREKTQISATQATQVQKQV 10 20 30 70 80 90 ej0056 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL ::::::::::::::::::::.:::::::. gi|739 VQATAEQMRLAQVIFDKNDSEFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLE 40 50 60 70 80 90 >>gi|149045660|gb|EDL98660.1| ubiquitin-associated prote (1127 aa) initn: 315 init1: 315 opt: 315 Z-score: 419.2 bits: 85.9 E(): 1e-14 Smith-Waterman score: 315; 80.000% identity (96.667% similar) in 60 aa overlap (30-89:1-60) 10 20 30 40 50 60 ej0056 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV ::::::.:.::::.::::. .....: :::: gi|149 MMTSVSNDRCRGAREKPQMPTTHAAQSQKQV 10 20 30 70 80 90 ej0056 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL ::::::::::::::::::::::::::::. gi|149 VQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINTLLE 40 50 60 70 80 90 >>gi|123229112|emb|CAM20986.1| ubiquitin-associated prot (1131 aa) initn: 313 init1: 313 opt: 313 Z-score: 416.5 bits: 85.4 E(): 1.5e-14 Smith-Waterman score: 313; 81.356% identity (96.610% similar) in 59 aa overlap (31-89:1-59) 10 20 30 40 50 60 ej0056 AAAAAAGLGSSESSSDFLFCTYIILYILYMMTSVSSDHCRGAQEKPQISAAQSTQPQKQV :::::.:.::::.::::. .:...: :::: gi|123 MTSVSNDRCRGAREKPQMPTAHAAQSQKQV 10 20 30 70 80 90 ej0056 VQATAEQMRLAQVIFDKNDSDFEAKVKQVCFWQRISSFL ::::::::::::::::::::::::::::. gi|123 VQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLE 40 50 60 70 80 90 99 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 19:03:54 2008 done: Fri Aug 8 19:07:04 2008 Total Scan time: 479.310 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]