hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-19133172/chunk_1/iprscan-20080808-19133172.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ej00565 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05735.2.ls Thrombospondin C-terminal region 596.2 2.8e-176 1 PF05735.2.fs Thrombospondin C-terminal region 594.2 6.2e-176 1 PF00090.9.fs Thrombospondin type 1 domain 238.1 5e-71 3 PF00090.9.ls Thrombospondin type 1 domain 243.7 3.5e-70 3 PF02412.9.ls Thrombospondin type 3 repeat 168.7 1.4e-47 12 PF02412.9.fs Thrombospondin type 3 repeat 145.9 1.2e-42 12 PF00093.8.fs von Willebrand factor type C domain 89.3 5.2e-25 1 PF00093.8.ls von Willebrand factor type C domain 90.9 3.5e-24 1 PF00008.17.fs EGF-like domain 45.5 7.3e-12 3 PF00008.17.ls EGF-like domain 48.4 2.2e-11 2 PF07645.6.fs Calcium binding EGF domain 27.8 1.1e-07 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00093.8.ls 1/1 373 427 .. 1 84 [] 90.9 3.5e-24 PF00093.8.fs 1/1 373 427 .. 1 84 [] 89.3 5.2e-25 PF00090.9.ls 1/3 438 483 .. 1 55 [] 66.0 1.1e-16 PF00090.9.fs 1/3 438 483 .. 1 55 [] 64.2 1.2e-18 PF00090.9.ls 2/3 494 544 .. 1 55 [] 94.2 3.6e-25 PF00090.9.fs 2/3 494 544 .. 1 55 [] 92.3 3.9e-27 PF00090.9.fs 3/3 551 601 .. 1 55 [] 81.6 6.3e-24 PF00090.9.ls 3/3 551 601 .. 1 55 [] 83.5 5.9e-22 PF00008.17.ls 2/2 705 744 .. 1 38 [] 32.0 2e-06 PF00008.17.fs 3/3 705 744 .. 1 38 [] 30.0 1.6e-07 PF02412.9.fs 1/12 782 794 .. 1 15 [] 18.4 0.00021 PF02412.9.ls 1/12 782 794 .. 1 15 [] 20.2 0.0068 PF02412.9.ls 3/12 818 830 .. 1 15 [] 14.3 0.39 PF02412.9.fs 3/12 818 830 .. 1 15 [] 12.4 0.012 PF02412.9.fs 4/12 841 853 .. 1 15 [] 13.8 0.0048 PF02412.9.ls 4/12 841 853 .. 1 15 [] 15.7 0.16 PF02412.9.fs 5/12 854 869 .. 1 15 [] 10.8 0.04 PF02412.9.ls 5/12 854 869 .. 1 15 [] 12.8 0.75 PF02412.9.ls 6/12 877 889 .. 1 15 [] 19.5 0.011 PF02412.9.fs 6/12 877 889 .. 1 15 [] 17.7 0.00034 PF02412.9.ls 7/12 900 912 .. 1 15 [] 15.9 0.14 PF02412.9.fs 7/12 900 912 .. 1 15 [] 14.1 0.0041 PF02412.9.fs 8/12 915 930 .. 1 15 [] 13.7 0.0053 PF02412.9.ls 8/12 915 930 .. 1 15 [] 15.7 0.16 PF02412.9.fs 9/12 938 950 .. 1 15 [] 14.0 0.0042 PF02412.9.ls 9/12 938 950 .. 1 15 [] 15.9 0.14 PF02412.9.fs 10/12 951 966 .. 1 15 [] 4.8 2.5 PF02412.9.ls 11/12 974 986 .. 1 15 [] 17.9 0.034 PF02412.9.fs 11/12 974 986 .. 1 15 [] 16.1 0.001 PF02412.9.fs 12/12 987 1002 .. 1 15 [] 7.0 0.54 PF05735.2.fs 1/1 1027 1225 .] 1 202 [] 594.2 6.2e-176 PF05735.2.ls 1/1 1027 1225 .] 1 202 [] 596.2 2.8e-176 Alignments of top-scoring domains: PF00093.8.ls: domain 1 of 1, from 373 to 427: score 90.9, E = 3.5e-24 *->CvqnGvvYengetWkpdsqPnGvdkCtyiCtCddiedavrlggkvlC C++nGv+Y+n+e+W++ds Ct +C+C++ ++++C ej00565 373 CYHNGVQYRNNEEWTVDS-------CT-ECHCQN--------SVTIC 403 dkitCppelLpsldCpnprrvdalvippGECCpewvC<-* +k++Cp ++C+n+ p+GECCp +C ej00565 404 KKVSCPI-----MPCSNA------TVPDGECCP--RC 427 PF00093.8.fs: domain 1 of 1, from 373 to 427: score 89.3, E = 5.2e-25 *->CvqnGvvYengetWkpdsqPnGvdkCtyiCtCddiedavrlggkvlC C++nGv+Y+n+e+W++ds Ct +C+C++ ++++C ej00565 373 CYHNGVQYRNNEEWTVDS-------CT-ECHCQN--------SVTIC 403 dkitCppelLpsldCpnprrvdalvippGECCpewvC<-* +k++Cp ++C+n+ p+GECCp +C ej00565 404 KKVSCPI-----MPCSNA------TVPDGECCP--RC 427 PF00090.9.ls: domain 1 of 3, from 438 to 483: score 66.0, E = 1.1e-16 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete spWseW++CS +CG+Gi++R+R+c+s ++ C+g ++ t+ ej00565 438 SPWSEWTSCSTSCGNGIQQRGRSCDSL------NNRCEGSSVQ--TR 476 aCdmmdkC<-* C + ++C ej00565 477 TC-HIQEC 483 PF00090.9.fs: domain 1 of 3, from 438 to 483: score 64.2, E = 1.2e-18 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete spWseW++CS +CG+Gi++R+R+c+s ++ C+g ++ t+ ej00565 438 SPWSEWTSCSTSCGNGIQQRGRSCDSL------NNRCEGSSVQ--TR 476 aCdmmdkC<-* C + ++C ej00565 477 TC-HIQEC 483 PF00090.9.ls: domain 2 of 3, from 494 to 544: score 94.2, E = 3.6e-25 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+Ws+WS+CSVTCG G+ tR+R+cnsp+Pq ++g+pC+g+++e t+ ej00565 494 SHWSPWSSCSVTCGDGVITRIRLCNSPSPQ-MNGKPCEGEARE--TK 537 aCdmmdkC<-* aC ++d C ej00565 538 AC-KKDAC 544 PF00090.9.fs: domain 2 of 3, from 494 to 544: score 92.3, E = 3.9e-27 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+Ws+WS+CSVTCG G+ tR+R+cnsp+Pq ++g+pC+g+++e t+ ej00565 494 SHWSPWSSCSVTCGDGVITRIRLCNSPSPQ-MNGKPCEGEARE--TK 537 aCdmmdkC<-* aC ++d C ej00565 538 AC-KKDAC 544 PF00090.9.fs: domain 3 of 3, from 551 to 601: score 81.6, E = 6.3e-24 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pWs+W CSVTCG+G++ R R+cn+p Pq +gg++C+gdv+e + ej00565 551 GPWSPWDICSVTCGGGVQKRSRLCNNPTPQ-FGGKDCVGDVTE--NQ 594 aCdmmdkC<-* +C +++ C ej00565 595 IC-NKQDC 601 PF00090.9.ls: domain 3 of 3, from 551 to 601: score 83.5, E = 5.9e-22 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pWs+W CSVTCG+G++ R R+cn+p Pq +gg++C+gdv+e + ej00565 551 GPWSPWDICSVTCGGGVQKRSRLCNNPTPQ-FGGKDCVGDVTE--NQ 594 aCdmmdkC<-* +C +++ C ej00565 595 IC-NKQDC 601 PF00008.17.ls: domain 2 of 2, from 705 to 744: score 32.0, E = 2e-06 *->CspnngpCsngGtCvdtp....ggytCeCppGyfllytGkrC<-* C++ ++ C+ +++C+++++ ++++y+CeC+pG ++++G+ C ej00565 705 CTDGTHDCNKNAKCNYLGhysdPMYRCECKPG--YAGNGIIC 744 PF00008.17.fs: domain 3 of 3, from 705 to 744: score 30.0, E = 1.6e-07 *->CspnngpCsngGtCvdtp....ggytCeCppGyfllytGkrC<-* C++ ++ C+ +++C+++++ ++++y+CeC+pG ++++G+ C ej00565 705 CTDGTHDCNKNAKCNYLGhysdPMYRCECKPG--YAGNGIIC 744 PF02412.9.fs: domain 1 of 12, from 782 to 794: score 18.4, E = 0.00021 *->eDsDnDgvgdnDaCd<-* eD+D+Dg+g DaCd ej00565 782 EDYDKDGIG--DACD 794 PF02412.9.ls: domain 1 of 12, from 782 to 794: score 20.2, E = 0.0068 *->eDsDnDgvgdnDaCd<-* eD+D+Dg+g DaCd ej00565 782 EDYDKDGIG--DACD 794 PF02412.9.ls: domain 3 of 12, from 818 to 830: score 14.3, E = 0.39 *->eDsDnDgvgdnDaCd<-* D+D+D vg D+Cd ej00565 818 YDYDRDDVG--DRCD 830 PF02412.9.fs: domain 3 of 12, from 818 to 830: score 12.4, E = 0.012 *->eDsDnDgvgdnDaCd<-* D+D+D vg D+Cd ej00565 818 YDYDRDDVG--DRCD 830 PF02412.9.fs: domain 4 of 12, from 841 to 853: score 13.8, E = 0.0048 *->eDsDnDgvgdnDaCd<-* +D+Dn+g g DaC ej00565 841 ADTDNNGEG--DACA 853 PF02412.9.ls: domain 4 of 12, from 841 to 853: score 15.7, E = 0.16 *->eDsDnDgvgdnDaCd<-* +D+Dn+g g DaC ej00565 841 ADTDNNGEG--DACA 853 PF02412.9.fs: domain 5 of 12, from 854 to 869: score 10.8, E = 0.04 *->eDsDnDgvgdn.DaCd<-* +D D+Dg+ +++D C+ ej00565 854 ADIDGDGILNErDNCQ 869 PF02412.9.ls: domain 5 of 12, from 854 to 869: score 12.8, E = 0.75 *->eDsDnDgvgdn.DaCd<-* +D D+Dg+ +++D C+ ej00565 854 ADIDGDGILNErDNCQ 869 PF02412.9.ls: domain 6 of 12, from 877 to 889: score 19.5, E = 0.011 *->eDsDnDgvgdnDaCd<-* +D+D Dgvg D+Cd ej00565 877 RDTDMDGVG--DQCD 889 PF02412.9.fs: domain 6 of 12, from 877 to 889: score 17.7, E = 0.00034 *->eDsDnDgvgdnDaCd<-* +D+D Dgvg D+Cd ej00565 877 RDTDMDGVG--DQCD 889 PF02412.9.ls: domain 7 of 12, from 900 to 912: score 15.9, E = 0.14 *->eDsDnDgvgdnDaCd<-* DsD+D +g D+Cd ej00565 900 LDSDSDRIG--DTCD 912 PF02412.9.fs: domain 7 of 12, from 900 to 912: score 14.1, E = 0.0041 *->eDsDnDgvgdnDaCd<-* DsD+D +g D+Cd ej00565 900 LDSDSDRIG--DTCD 912 PF02412.9.fs: domain 8 of 12, from 915 to 930: score 13.7, E = 0.0053 *->eDsDnDgvgdn.DaCd<-* +D D+Dg+++n D C+ ej00565 915 QDIDEDGHQNNlDNCP 930 PF02412.9.ls: domain 8 of 12, from 915 to 930: score 15.7, E = 0.16 *->eDsDnDgvgdn.DaCd<-* +D D+Dg+++n D C+ ej00565 915 QDIDEDGHQNNlDNCP 930 PF02412.9.fs: domain 9 of 12, from 938 to 950: score 14.0, E = 0.0042 *->eDsDnDgvgdnDaCd<-* +D+D+Dg g DaCd ej00565 938 ADHDKDGKG--DACD 950 PF02412.9.ls: domain 9 of 12, from 938 to 950: score 15.9, E = 0.14 *->eDsDnDgvgdnDaCd<-* +D+D+Dg g DaCd ej00565 938 ADHDKDGKG--DACD 950 PF02412.9.fs: domain 10 of 12, from 951 to 966: score 4.8, E = 2.5 *->eDsDnDgvgdn.DaCd<-* D+DnDg+ d++D C ej00565 951 HDDDNDGIPDDkDNCR 966 PF02412.9.ls: domain 11 of 12, from 974 to 986: score 17.9, E = 0.034 *->eDsDnDgvgdnDaCd<-* +DsD+Dg+g DaC+ ej00565 974 KDSDGDGRG--DACK 986 PF02412.9.fs: domain 11 of 12, from 974 to 986: score 16.1, E = 0.001 *->eDsDnDgvgdnDaCd<-* +DsD+Dg+g DaC+ ej00565 974 KDSDGDGRG--DACK 986 PF02412.9.fs: domain 12 of 12, from 987 to 1002: score 7.0, E = 0.54 *->eDsDnDgvgdn.DaCd<-* D D+D v d +D C+ ej00565 987 DDFDHDSVPDIdDICP 1002 PF05735.2.fs: domain 1 of 1, from 1027 to 1225: score 594.2, E = 6.2e-176 *->QaDPNWvVraqGkEiVQTlNsDPGLAVGydaFngVDFeGTFyiNtet Q+DPNWvVr+qGkE+VQT+N+DPGLAVGyd+Fn+VDF+GTF+iNte+ ej00565 1027 QNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTER 1073 DDDYAGFvFgYQsSskfYVVmWKqvtQtYWearPfrAsaepGiqvKvVnS DDDYAGFvFgYQsSs+fYVVmWKqvtQ+YW+++P+rA++++G++vKvVnS ej00565 1074 DDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNS 1123 teGPGehLRNaLWHtGnTdgqvRlLWkDPrnigWKdktsYRWsLsHRPkv t+GPGehLRNaLWHtGnT+gqvR+LW+DPr+igWKd+t+YRW+LsHRPk+ ej00565 1124 TTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKT 1173 GyIRvrmyEGkklvaDSGvvfDkTlkGGRLGvFcFSQemiiwSnLkYkCn G+IRv+myEGkk++aDSG+++DkT++GGRLG+F+FSQem+++S+LkY+C+ ej00565 1174 GFIRVVMYEGKKIMADSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECR 1223 drvkP<-* d P ej00565 1224 D---P 1225 PF05735.2.ls: domain 1 of 1, from 1027 to 1225: score 596.2, E = 2.8e-176 *->QaDPNWvVraqGkEiVQTlNsDPGLAVGydaFngVDFeGTFyiNtet Q+DPNWvVr+qGkE+VQT+N+DPGLAVGyd+Fn+VDF+GTF+iNte+ ej00565 1027 QNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTER 1073 DDDYAGFvFgYQsSskfYVVmWKqvtQtYWearPfrAsaepGiqvKvVnS DDDYAGFvFgYQsSs+fYVVmWKqvtQ+YW+++P+rA++++G++vKvVnS ej00565 1074 DDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNS 1123 teGPGehLRNaLWHtGnTdgqvRlLWkDPrnigWKdktsYRWsLsHRPkv t+GPGehLRNaLWHtGnT+gqvR+LW+DPr+igWKd+t+YRW+LsHRPk+ ej00565 1124 TTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKT 1173 GyIRvrmyEGkklvaDSGvvfDkTlkGGRLGvFcFSQemiiwSnLkYkCn G+IRv+myEGkk++aDSG+++DkT++GGRLG+F+FSQem+++S+LkY+C+ ej00565 1174 GFIRVVMYEGKKIMADSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECR 1223 drvkP<-* d P ej00565 1224 D---P 1225 //