hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-19201777/chunk_1/iprscan-20080808-19201777.nocrc
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Query sequence: ej00605
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00276                                                 388.8   3.1e-112   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00276      1/2      38   173 ..     1   138 []   188.3  7.3e-52
SM00276      2/2     206   338 .]     1   138 []   200.6  1.5e-55

Alignments of top-scoring domains:
SM00276: domain 1 of 2, from 38 to 173: score 188.3, E = 7.3e-52
                   *->vPykstlpgglkpGqtltvkGivtpdanqkrFsiNLltg....engd
                      +Py+ t+p +l pG+ +++ G+v++da   rF+++L+ g++ ++++d
     ej00605    38    IPYVGTIPDQLDPGTLIVICGHVPSDA--DRFQVDLQNGssvkPRAD 82   

                   iaLHfNpRFdehgdvgtvVcNSlensGsWGsEeReggfPFqkGqeFdltI
                   +a+HfNpRF++    g++VcN+l+n ++WG+Ee   + PF++ + F++ I
     ej00605    83 VAFHFNPRFKR---AGCIVCNTLIN-EKWGREEITYDTPFKREKSFEIVI 128  

                   ivqpdkFqIfvNgghfaeFpHRlplesidylsinGDvqltsvsle<-*
                   +v  dkFq++vNg+h + + HR+++e+id+l+i G v+++s+ ++   
     ej00605   129 MVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFS    173  

SM00276: domain 2 of 2, from 206 to 338: score 200.6, E = 1.5e-55
                   *->vPykstlpgglkpGqtltvkGivtpdanqkrFsiNLltgengdiaLH
                      +P++++l +++ pG+t++vkG v+ +a  k+F+++Ll+g+++diaLH
     ej00605   206    LPFAARLNTPMGPGRTVVVKGEVNANA--KSFNVDLLAGKSKDIALH 250  

                   fNpRFdehgdvgtvVcNSlensGsWGsEeReg.gfPFqkGqeFdltIivq
                   +NpR++     ++ V+NS+++ +sWG+EeR  ++fPF++G++F++ I+++
     ej00605   251 LNPRLNI----KAFVRNSFLQ-ESWGEEERNItSFPFSPGMYFEMIIYCD 295  

                   pdkFqIfvNgghfaeFpHRlples.idylsinGDvqltsvsle<-*
                     +F+++vNg+h++e++HR++++s+id+l+inGD++l +v+ +   
     ej00605   296 VREFKVAVNGVHSLEYKHRFKELSsIDTLEINGDIHLLEVRSW    338  

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