hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-19261274/chunk_1/iprscan-20080808-19261274.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ej00608
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF08447.1.fs PAS fold                                    111.9    1.8e-30   2
PF08447.1.ls PAS fold                                     98.2    2.2e-26   1
PF08778.1.ls HIF-1 alpha C terminal transactivation do    90.2    5.8e-24   1
PF08778.1.fs HIF-1 alpha C terminal transactivation do    88.2    2.3e-23   1
PF00989.14.fs PAS fold                                     36.0    2.2e-10   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00989.14.fs   2/2     259   334 ..    24   108 ..    21.5  5.4e-06
PF08447.1.fs   2/2     260   353 ..     1   100 []    96.2  6.6e-26
PF08447.1.ls   1/1     260   353 ..     1   100 []    98.2  2.2e-26
PF08778.1.ls   1/1     795   834 .]     1    40 []    90.2  5.8e-24
PF08778.1.fs   1/1     795   834 .]     1    40 []    88.2  2.3e-23

Alignments of top-scoring domains:
PF00989.14.fs: domain 2 of 2, from 259 to 334: score 21.5, E = 5.4e-06
                   *->rilyvNaaaeellGlsreeviGkslldlipeeddaec.l.vaelllq
                      +++y+ + ++el G+ +ee++G+s++++++  d++  + ++++ +++
     ej00608   259    KFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLtKtHHDMFTK 305  

                   aleqgee.rgvevsfrvsgqrflvrdgrpihvevraspvrd<-*
                    + ++++ r+    + +         g++++ve +a+ +++   
     ej00608   306 GQVTTGQyRM----LAK--------RGGYVWVETQATVIYN    334  

PF08447.1.fs: domain 2 of 2, from 260 to 353: score 96.2, E = 6.6e-26
                   *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea
                      + y+++r+ e++GY+peellg+s    ++++ H  D +++ + +++ 
     ej00608   260    FSYCDERITELMGYEPEELLGRS----IYEYYHALDSDHLTKTHHD- 301  

                   lklkkgepysgeyRirrkdGeyrWveargrvirrDenGkpvrviGvavDI
                       kg++ +g+yR++ k G+y+Wve++++vi++ +n++p ++++v++++
     ej00608   302 -MFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVV 350  

                   Ter<-*
                   +     
     ej00608   351 SGI    353  

PF08447.1.ls: domain 1 of 1, from 260 to 353: score 98.2, E = 2.2e-26
                   *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea
                      + y+++r+ e++GY+peellg+s    ++++ H  D +++ + +++ 
     ej00608   260    FSYCDERITELMGYEPEELLGRS----IYEYYHALDSDHLTKTHHD- 301  

                   lklkkgepysgeyRirrkdGeyrWveargrvirrDenGkpvrviGvavDI
                       kg++ +g+yR++ k G+y+Wve++++vi++ +n++p ++++v++++
     ej00608   302 -MFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVV 350  

                   Ter<-*
                   +     
     ej00608   351 SGI    353  

PF08778.1.ls: domain 1 of 1, from 795 to 834: score 90.2, E = 5.8e-24
                   *->fslfiLPeLtrYDCEVNaPlqgrqyLLqGeELlrALDqvn<-*
                      +++++LP+Lt+YDCEVNaP+qg+++LLqGeELlrALDqvn   
     ej00608   795    MDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN    834  

PF08778.1.fs: domain 1 of 1, from 795 to 834: score 88.2, E = 2.3e-23
                   *->fslfiLPeLtrYDCEVNaPlqgrqyLLqGeELlrALDqvn<-*
                      +++++LP+Lt+YDCEVNaP+qg+++LLqGeELlrALDqvn   
     ej00608   795    MDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN    834  

//