hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-19261274/chunk_1/iprscan-20080808-19261274.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ej00608
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00091                                                  92.7    4.3e-23   2
SM00086                                                  45.1    9.1e-09   1
SM00353                                                  45.0    9.8e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00353    1/1      31    86 ..     1    61 []    45.0  9.8e-09
SM00091    1/2      95   161 ..     1    68 []    49.2  5.3e-10
SM00091    2/2     238   304 ..     1    68 []    43.5  2.8e-08
SM00086    1/1     310   353 ..     1    43 []    45.1  9.1e-09

Alignments of top-scoring domains:
SM00353: domain 1 of 1, from 31 to 86: score 45.0, E = 9.8e-09
                   *->narERrlrRRekiNeqafdeLrslvPtlpkgggnskKlsKasiLrlA
                        + R   RR k  e  f+eL+  +P  +   + s+ l+Kas+ rl+
     ej00608    31    RDAAR--SRRSKESE-VFYELAHQLPLPH---NVSSHLDKASVMRLT 71   

                   ieYIr.ksLqeqlqe<-*
                   i+Y+r ++L ++ +    
     ej00608    72 ISYLRvRKLLDAGDL    86   

SM00091: domain 1 of 2, from 95 to 161: score 49.2, E = 5.3e-10
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                      +++   l +l+ +++vl+ dG+++y+++++ +++G+++ el G+s++
     ej00608    95    QMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYMGLTQFELTGHSVF 141  

                   elihpedrlleevqe.lqrlla<-*
                   ++ hp d+  ee++e l +      
     ej00608   142 DFTHPCDH--EEMREmLTHRNG    161  

SM00091: domain 2 of 2, from 238 to 304: score 43.5, E = 2.8e-08
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                      + + +i   + +++ +++ld+++ y++++++el+Gy+peel+G+s++
     ej00608   238    PSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIY 284  

                   elihpedrlleevqe.lqrlla<-*
                   e++h  d   +++  ++ + +    
     ej00608   285 EYYHALDS--DHLTKtHHDMFT    304  

SM00086: domain 1 of 1, from 310 to 353: score 45.1, E = 9.1e-09
                   *->tveyrlrrkdGsliwvlvsaspird.edgevegilgvvrDITer<-*
                      t++yr+++k G+++wv+++a++i+++++ ++++i++v+++++     
     ej00608   310    TGQYRMLAKRGGYVWVETQATVIYNtKNSQPQCIVCVNYVVSGI    353  

//