# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oej00652.fasta.nr -Q ej00652.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ej00652, 369 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823417 sequences Expectation_n fit: rho(ln(x))= 5.3870+/-0.000187; mu= 9.6135+/- 0.010 mean_var=79.0126+/-15.461, 0's: 27 Z-trim: 36 B-trim: 30 in 1/65 Lambda= 0.144287 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089416|dbj|BAD93152.1| nuclear RNA export fac ( 369) 2492 528.0 1.1e-147 gi|119594511|gb|EAW74105.1| nuclear RNA export fac ( 356) 2393 507.4 1.6e-141 gi|75041365|sp|Q5R752.1|NXF1_PONAB Nuclear RNA exp ( 626) 2285 485.1 1.5e-134 gi|109105694|ref|XP_001115982.1| PREDICTED: simila ( 621) 2278 483.6 4.1e-134 gi|114638101|ref|XP_001157780.1| PREDICTED: nuclea ( 526) 2265 480.9 2.3e-133 gi|114638099|ref|XP_001157829.1| PREDICTED: nuclea ( 587) 2265 480.9 2.5e-133 gi|114638085|ref|XP_001157880.1| PREDICTED: nuclea ( 605) 2265 480.9 2.6e-133 gi|20139282|sp|Q9UBU9|NXF1_HUMAN Nuclear RNA expor ( 619) 2265 480.9 2.7e-133 gi|4406524|gb|AAD20016.1| tip-associated protein T ( 619) 2260 479.9 5.5e-133 gi|73983367|ref|XP_867514.1| PREDICTED: similar to ( 355) 2237 474.9 9.8e-132 gi|109105698|ref|XP_001115941.1| PREDICTED: simila ( 617) 2215 470.5 3.6e-130 gi|114638087|ref|XP_508503.2| PREDICTED: nuclear R ( 615) 2204 468.2 1.8e-129 gi|148701415|gb|EDL33362.1| nuclear RNA export fac ( 446) 2182 463.5 3.3e-128 gi|73983365|ref|XP_540901.2| PREDICTED: similar to ( 586) 2158 458.6 1.3e-126 gi|149062293|gb|EDM12716.1| rCG48381 [Rattus norve ( 626) 2082 442.8 7.9e-122 gi|122064633|sp|Q1RMS5|NXF1_BOVIN Nuclear RNA expo ( 620) 2058 437.8 2.5e-120 gi|13542780|gb|AAH05594.1| Nuclear RNA export fact ( 618) 2057 437.6 2.9e-120 gi|20139106|sp|Q99JX7|NXF1_MOUSE Nuclear RNA expor ( 618) 2052 436.6 5.9e-120 gi|20455167|sp|O88984|NXF1_RAT Nuclear RNA export ( 618) 2050 436.2 7.9e-120 gi|26346549|dbj|BAC36922.1| unnamed protein produc ( 618) 2050 436.2 7.9e-120 gi|109105700|ref|XP_001115959.1| PREDICTED: simila ( 561) 1856 395.7 1e-107 gi|126333623|ref|XP_001362717.1| PREDICTED: simila ( 624) 1855 395.6 1.3e-107 gi|114638091|ref|XP_001157498.1| PREDICTED: nuclea ( 559) 1843 393.0 6.8e-107 gi|1724120|gb|AAB81111.1| tip associating protein ( 559) 1823 388.9 1.2e-105 gi|114638089|ref|XP_001157931.1| PREDICTED: nuclea ( 583) 1810 386.2 8.2e-105 gi|20150946|pdb|1KOO|A Chain A, The Crystal Struct ( 277) 1570 336.0 5.1e-90 gi|20150942|pdb|1KOH|A Chain A, The Crystal Struct ( 277) 1542 330.2 2.9e-88 gi|12084556|pdb|1FT8|A Chain A, Crystal Structure ( 271) 1540 329.7 3.8e-88 gi|11514084|pdb|1FO1|A Chain A, Crystal Structure ( 271) 1520 325.6 6.7e-87 gi|20455171|sp|P58797|NXF1_COTJA Nuclear RNA expor ( 616) 1396 300.0 7.5e-79 gi|114638095|ref|XP_001157393.1| PREDICTED: nuclea ( 482) 1287 277.2 4.2e-72 gi|74008262|ref|XP_549144.2| PREDICTED: similar to ( 592) 1280 275.9 1.4e-71 gi|194228114|ref|XP_001914856.1| PREDICTED: simila ( 712) 1273 274.5 4.3e-71 gi|194228124|ref|XP_001488763.2| PREDICTED: nuclea ( 618) 1266 273.0 1.1e-70 gi|114689521|ref|XP_001134768.1| PREDICTED: nuclea ( 626) 1245 268.6 2.2e-69 gi|74008306|ref|XP_549146.2| PREDICTED: similar to ( 615) 1242 268.0 3.4e-69 gi|109131615|ref|XP_001094356.1| PREDICTED: simila ( 760) 1227 264.9 3.4e-68 gi|20978536|sp|Q9GZY0.1|NXF2_HUMAN Nuclear RNA exp ( 626) 1216 262.6 1.5e-67 gi|123980474|gb|ABM82066.1| nuclear RNA export fac ( 626) 1216 262.6 1.5e-67 gi|89268959|emb|CAJ81571.1| nuclear RNA export fac ( 620) 1213 261.9 2.2e-67 gi|13603875|gb|AAK31975.1|AF285596_1 nuclear expor ( 560) 1150 248.8 1.8e-63 gi|67971384|dbj|BAE02034.1| unnamed protein produc ( 560) 1147 248.2 2.8e-63 gi|11359915|pir||T46922 hypothetical protein DKFZp ( 409) 1107 239.7 7e-61 gi|49619105|gb|AAT68137.1| nuclear RNA export fact ( 386) 1093 236.8 5.1e-60 gi|126342583|ref|XP_001371739.1| PREDICTED: hypoth ( 660) 1095 237.4 5.8e-60 gi|189534068|ref|XP_001923961.1| PREDICTED: nuclea ( 642) 1090 236.3 1.2e-59 gi|47682833|gb|AAH70656.1| MGC82224 protein [Xenop ( 614) 1084 235.1 2.7e-59 gi|30267714|gb|AAP20938.1| nuclear RNA export fact ( 620) 1027 223.2 1e-55 gi|7020501|dbj|BAA91154.1| unnamed protein product ( 515) 1021 221.9 2.1e-55 gi|148691884|gb|EDL23831.1| nuclear RNA export fac ( 595) 1021 221.9 2.3e-55 >>gi|62089416|dbj|BAD93152.1| nuclear RNA export factor (369 aa) initn: 2492 init1: 2492 opt: 2492 Z-score: 2806.9 bits: 528.0 E(): 1.1e-147 Smith-Waterman score: 2492; 100.000% identity (100.000% similar) in 369 aa overlap (1-369:1-369) 10 20 30 40 50 60 ej0065 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI 10 20 30 40 50 60 70 80 90 100 110 120 ej0065 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG 70 80 90 100 110 120 130 140 150 160 170 180 ej0065 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS 130 140 150 160 170 180 190 200 210 220 230 240 ej0065 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL 190 200 210 220 230 240 250 260 270 280 290 300 ej0065 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 250 260 270 280 290 300 310 320 330 340 350 360 ej0065 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP 310 320 330 340 350 360 ej0065 PGDLHPLGG ::::::::: gi|620 PGDLHPLGG >>gi|119594511|gb|EAW74105.1| nuclear RNA export factor (356 aa) initn: 2393 init1: 2393 opt: 2393 Z-score: 2695.7 bits: 507.4 E(): 1.6e-141 Smith-Waterman score: 2393; 100.000% identity (100.000% similar) in 356 aa overlap (14-369:1-356) 10 20 30 40 50 60 ej0065 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI ::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI 10 20 30 40 70 80 90 100 110 120 ej0065 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG 50 60 70 80 90 100 130 140 150 160 170 180 ej0065 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS 110 120 130 140 150 160 190 200 210 220 230 240 ej0065 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL 170 180 190 200 210 220 250 260 270 280 290 300 ej0065 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 230 240 250 260 270 280 310 320 330 340 350 360 ej0065 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP 290 300 310 320 330 340 ej0065 PGDLHPLGG ::::::::: gi|119 PGDLHPLGG 350 >>gi|75041365|sp|Q5R752.1|NXF1_PONAB Nuclear RNA export (626 aa) initn: 2284 init1: 2284 opt: 2285 Z-score: 2570.8 bits: 485.1 E(): 1.5e-134 Smith-Waterman score: 2285; 96.601% identity (98.300% similar) in 353 aa overlap (14-366:1-353) 10 20 30 40 50 60 ej0065 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI ::::::::::::::::::::::::::::::::::::::::::::::: gi|750 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI 10 20 30 40 70 80 90 100 110 120 ej0065 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|750 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDAWHDRDRIHVTVRRDRAPPERGG 50 60 70 80 90 100 130 140 150 160 170 180 ej0065 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS 110 120 130 140 150 160 190 200 210 220 230 240 ej0065 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: gi|750 TASALKAVNYKILDRENRRISIIINPSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL 170 180 190 200 210 220 250 260 270 280 290 300 ej0065 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV ::::::::::::.::::::::::::::::::.::::::::::::::.::::::::::::: gi|750 DLKGLRSDPDLVSQNIDVVLNRRSCMAATLRVIEENIPELLSLNLSHNRLYRLDDMSSIV 230 240 250 260 270 280 310 320 330 340 350 360 ej0065 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 QKVPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSA 290 300 310 320 330 340 ej0065 PGDLHPLGG . : gi|750 IRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDS 350 360 370 380 390 400 >>gi|109105694|ref|XP_001115982.1| PREDICTED: similar to (621 aa) initn: 2278 init1: 2278 opt: 2278 Z-score: 2563.0 bits: 483.6 E(): 4.1e-134 Smith-Waterman score: 2278; 100.000% identity (100.000% similar) in 341 aa overlap (14-354:1-341) 10 20 30 40 50 60 ej0065 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI ::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI 10 20 30 40 70 80 90 100 110 120 ej0065 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG 50 60 70 80 90 100 130 140 150 160 170 180 ej0065 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS 110 120 130 140 150 160 190 200 210 220 230 240 ej0065 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL 170 180 190 200 210 220 250 260 270 280 290 300 ej0065 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 230 240 250 260 270 280 310 320 330 340 350 360 ej0065 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVRDTFLR 290 300 310 320 330 340 ej0065 PGDLHPLGG gi|109 IHLPRVDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQG 350 360 370 380 390 400 >>gi|114638101|ref|XP_001157780.1| PREDICTED: nuclear RN (526 aa) initn: 2265 init1: 2265 opt: 2265 Z-score: 2549.3 bits: 480.9 E(): 2.3e-133 Smith-Waterman score: 2265; 99.120% identity (99.707% similar) in 341 aa overlap (14-354:1-341) 10 20 30 40 50 60 ej0065 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI ::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI 10 20 30 40 70 80 90 100 110 120 ej0065 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG 50 60 70 80 90 100 130 140 150 160 170 180 ej0065 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS 110 120 130 140 150 160 190 200 210 220 230 240 ej0065 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL 170 180 190 200 210 220 250 260 270 280 290 300 ej0065 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 230 240 250 260 270 280 310 320 330 340 350 360 ej0065 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP ::::::::::::::::::::::::::::::::::::::::::::::::::: .. gi|114 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPK 290 300 310 320 330 340 ej0065 PGDLHPLGG gi|114 LLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLL 350 360 370 380 390 400 >>gi|114638099|ref|XP_001157829.1| PREDICTED: nuclear RN (587 aa) initn: 2265 init1: 2265 opt: 2265 Z-score: 2548.7 bits: 480.9 E(): 2.5e-133 Smith-Waterman score: 2265; 99.120% identity (99.707% similar) in 341 aa overlap (14-354:1-341) 10 20 30 40 50 60 ej0065 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI ::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI 10 20 30 40 70 80 90 100 110 120 ej0065 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG 50 60 70 80 90 100 130 140 150 160 170 180 ej0065 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS 110 120 130 140 150 160 190 200 210 220 230 240 ej0065 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL 170 180 190 200 210 220 250 260 270 280 290 300 ej0065 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 230 240 250 260 270 280 310 320 330 340 350 360 ej0065 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP ::::::::::::::::::::::::::::::::::::::::::::::::::: .. gi|114 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPK 290 300 310 320 330 340 ej0065 PGDLHPLGG gi|114 LLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLL 350 360 370 380 390 400 >>gi|114638085|ref|XP_001157880.1| PREDICTED: nuclear RN (605 aa) initn: 2265 init1: 2265 opt: 2265 Z-score: 2548.5 bits: 480.9 E(): 2.6e-133 Smith-Waterman score: 2265; 99.120% identity (99.707% similar) in 341 aa overlap (14-354:1-341) 10 20 30 40 50 60 ej0065 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI ::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI 10 20 30 40 70 80 90 100 110 120 ej0065 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG 50 60 70 80 90 100 130 140 150 160 170 180 ej0065 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS 110 120 130 140 150 160 190 200 210 220 230 240 ej0065 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL 170 180 190 200 210 220 250 260 270 280 290 300 ej0065 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 230 240 250 260 270 280 310 320 330 340 350 360 ej0065 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP ::::::::::::::::::::::::::::::::::::::::::::::::::: .. gi|114 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPK 290 300 310 320 330 340 ej0065 PGDLHPLGG gi|114 LLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLL 350 360 370 380 390 400 >>gi|20139282|sp|Q9UBU9|NXF1_HUMAN Nuclear RNA export fa (619 aa) initn: 2265 init1: 2265 opt: 2265 Z-score: 2548.3 bits: 480.9 E(): 2.7e-133 Smith-Waterman score: 2265; 99.120% identity (99.707% similar) in 341 aa overlap (14-354:1-341) 10 20 30 40 50 60 ej0065 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI ::::::::::::::::::::::::::::::::::::::::::::::: gi|201 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI 10 20 30 40 70 80 90 100 110 120 ej0065 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG 50 60 70 80 90 100 130 140 150 160 170 180 ej0065 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS 110 120 130 140 150 160 190 200 210 220 230 240 ej0065 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL 170 180 190 200 210 220 250 260 270 280 290 300 ej0065 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 230 240 250 260 270 280 310 320 330 340 350 360 ej0065 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP ::::::::::::::::::::::::::::::::::::::::::::::::::: .. gi|201 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPK 290 300 310 320 330 340 ej0065 PGDLHPLGG gi|201 LLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLL 350 360 370 380 390 400 >>gi|4406524|gb|AAD20016.1| tip-associated protein TAP [ (619 aa) initn: 2260 init1: 2260 opt: 2260 Z-score: 2542.7 bits: 479.9 E(): 5.5e-133 Smith-Waterman score: 2260; 98.827% identity (99.707% similar) in 341 aa overlap (14-354:1-341) 10 20 30 40 50 60 ej0065 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI ::::::::::::::::::::::::::::::::::::::::::::::: gi|440 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI 10 20 30 40 70 80 90 100 110 120 ej0065 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|440 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG 50 60 70 80 90 100 130 140 150 160 170 180 ej0065 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|440 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS 110 120 130 140 150 160 190 200 210 220 230 240 ej0065 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|440 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL 170 180 190 200 210 220 250 260 270 280 290 300 ej0065 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|440 DLKGLRSDPDLVAQNIDVVLNRRSCMAANLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 230 240 250 260 270 280 310 320 330 340 350 360 ej0065 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP ::::::::::::::::::::::::::::::::::::::::::::::::::: .. gi|440 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPK 290 300 310 320 330 340 ej0065 PGDLHPLGG gi|440 LLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLL 350 360 370 380 390 400 >>gi|73983367|ref|XP_867514.1| PREDICTED: similar to nuc (355 aa) initn: 2177 init1: 2177 opt: 2237 Z-score: 2520.2 bits: 474.9 E(): 9.8e-132 Smith-Waterman score: 2237; 92.978% identity (97.191% similar) in 356 aa overlap (14-369:1-355) 10 20 30 40 50 60 ej0065 RPAPEPALDLRCGMADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGI ::::::.:.:::: ::.::::.::::::::::::::::::::::::: gi|739 MADEGKAYNEHDD-RVSFPQRRKKGRGPFRWKYGEGNRRSGRGGSGI 10 20 30 40 70 80 90 100 110 120 ej0065 RSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGG ::::::::: ::::::::: ::.:.::: :::::::.::::::::::::::: ::::: gi|739 RSSRLEEDDRDVAMSDAQDVPRIRHNPYPPRPNRRGDSWHDRDRIHVTVRRDRILPERGG 50 60 70 80 90 100 130 140 150 160 170 180 ej0065 AGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS :::::::::::::::::::::::::.::::.::::::::::::::::::::::::::::: gi|739 AGTSQDGTSKNWFKITIPYGRKYDKSWLLSVIQSKCSVPFTPIEFHYENTRAQFFVEDAS 110 120 130 140 150 160 190 200 210 220 230 240 ej0065 TASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL ::::::::::::::.::::::::::::.:::.. :::::::::::::::::::::::::: gi|739 TASALKAVNYKILDQENRRISIIINSSVPPHSVQNELKPEQVEQLKLIMSKRYDGSQQAL 170 180 190 200 210 220 250 260 270 280 290 300 ej0065 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|739 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSLV 230 240 250 260 270 280 310 320 330 340 350 360 ej0065 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSP ::::::::::::::::::::::::.::::::::::::: ::::::::::::::::: ::: gi|739 QKAPNLKILNLSGNELKSERELDKVKGLKLEELWLDGNPLCDTFRDQSTYIRSVVASVSP 290 300 310 320 330 340 ej0065 PGDLHPLGG ::::::::: gi|739 PGDLHPLGG 350 369 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 19:42:54 2008 done: Fri Aug 8 19:45:26 2008 Total Scan time: 789.590 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]