hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-19452713/chunk_1/iprscan-20080808-19452713.nocrc
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Query sequence: ej00652
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF09162.1.ls Tap, RNA-binding                           226.5    5.5e-65   1
PF09162.1.fs Tap, RNA-binding                           224.5    2.2e-64   1
PF00560.23.fs Leucine Rich Repeat                         17.3     0.0011   3
PF00560.23.ls Leucine Rich Repeat                         22.8     0.0012   3

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF09162.1.fs   1/1     126   213 ..     1    88 []   224.5  2.2e-64
PF09162.1.ls   1/1     126   213 ..     1    88 []   226.5  5.5e-65
PF00560.23.ls   2/3     305   328 ..     1    24 []    12.6      1.1

Alignments of top-scoring domains:
PF09162.1.fs: domain 1 of 1, from 126 to 213: score 224.5, E = 2.2e-64
                   *->DgtsknWFKvTIPyGkKYDKtWLLnsiqslCSvPFtPVeFHydknrA
                      DgtsknWFK+TIPyG+KYDK WLL++iqs+CSvPFtP+eFHy+++rA
     ej00652   126    DGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRA 172  

                   hFFVedattAsALKdVSrkItDedneKiaIfvnpsppPysv<-*
                   +FFVeda+tAsALK+V++kI+D++n++i+I++n+s+pP+ +   
     ej00652   173 QFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTI    213  

PF09162.1.ls: domain 1 of 1, from 126 to 213: score 226.5, E = 5.5e-65
                   *->DgtsknWFKvTIPyGkKYDKtWLLnsiqslCSvPFtPVeFHydknrA
                      DgtsknWFK+TIPyG+KYDK WLL++iqs+CSvPFtP+eFHy+++rA
     ej00652   126    DGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRA 172  

                   hFFVedattAsALKdVSrkItDedneKiaIfvnpsppPysv<-*
                   +FFVeda+tAsALK+V++kI+D++n++i+I++n+s+pP+ +   
     ej00652   173 QFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTI    213  

PF00560.23.ls: domain 2 of 3, from 305 to 328: score 12.6, E = 1.1
                   *->nLeeLdLsgCNpsltgs...lpssl.nl<-*
                      nL++L+Lsg N  l +s+ +l++ +++l   
     ej00652   305    NLKILNLSG-N-EL-KSereLDK-IkGL    328  

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