hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-13393949/chunk_1/iprscan-20090525-13393949.nocrc
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Query sequence: ej00665
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00481.12.fs Protein phosphatase 2C                         105.4    1.7e-29   1
PF00481.12.ls Protein phosphatase 2C                          80.1    6.2e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00481.12.ls   1/1     279   608 ..     1   303 []    80.1  6.2e-21
PF00481.12.fs   1/1     383   546 ..   118   269 ..   105.4  1.7e-29

Alignments of top-scoring domains:
PF00481.12.ls: domain 1 of 1, from 279 to 608: score 80.1, E = 6.2e-21
                   *->ldvgvsrmqgwrksmeDahialknlnssssgkdsisffavfDghgGs
                      + ++   + + +   e +  +l+ l+ +    ++++f + + + +  
     ej00665   279    SLLPHETLLEIENAVESGRALLPILQWH--KHPNDYFSKEASKLYFN 323  

                   qaakyagkhlekaltilaerksfpegnpnEwklsdledalrksfleadtd
                    + +y  + ++     l   +s++ +         +++al+++f ++d d
     ej00665   324 SLRTYWQELID-----LNTGESTDID---------VKEALINAFKRLDND 359  

                   eelrsa.adsan....h.vltkedlssGsTAvvalirgqkklLyvANvGD
                   + l  a+  + n+  +  vl+     sG+TA va + g +  L+vAN GD
     ej00665   360 ISLE-AqVGDPNsflnYlVLR--VAFSGATACVAHVDGVD--LHVANTGD 404  

                   SravLcrngnaikl.vtqLtedHkpsdedEkrRIeaaGGfvsrvs..gng
                   Sra+L+ + +++ +++++L++dH +++e+E +R++ ++   + +s   + 
     ej00665   405 SRAMLGVQEEDGSWsAVTLSNDHNAQNERELERLKLEHPKSEAKSvvKQD 454  

                   RvnGvfLavSRAfGDfelKpnvtlgpels.l.e..........rGifse.
                   R+ G  L   RAfGD+ +K    +++ + +  e+++++ +++++  f ++
     ej00665   455 RLLGL-LMPFRAFGDVKFKW---SIDLQKrViEsgpdqlndneYTKFIPp 500  

                   e....qpVsaePdvtsstkiteskDeFliLAcDGlWDvvsdqeavdivrs
                     +++++ +aeP+vt ++++ ++ D+Fl+LA+DGlW+ +  q++v iv +
     ej00665   501 NyhtpPYLTAEPEVT-YHRLRPQ-DKFLVLATDGLWETMHRQDVVRIVGE 548  

                   elsdgn.ks...........................agspmeaaekLvde
                    l+ ++++++   ++ + + ++ ++  ++++++ +++   + aa+ L+++
     ej00665   549 YLTGMHhQQpiavggykvtlgqmhgllterrtkmssVFEDQNAATHLIRH 598  

                   AiargseDni<-*
                   A+ ++   ++   
     ej00665   599 AVGNNEFGTV    608  

PF00481.12.fs: domain 1 of 1, from 383 to 546: score 105.4, E = 1.7e-29
                   *->sGsTAvvalirgqkklLyvANvGDSravLcrngnaikl.vtqLtedH
                      sG+TA va + g +  L+vAN GDSra+L+ + +++ +++++L++dH
     ej00665   383    SGATACVAHVDGVD--LHVANTGDSRAMLGVQEEDGSWsAVTLSNDH 427  

                   kpsdedEkrRIeaaGGfvsrvs..gngRvnGvfLavSRAfGDfelKpnvt
                    +++e+E +R++ ++   + +s   + R+ G  L   RAfGD+ +K    
     ej00665   428 NAQNERELERLKLEHPKSEAKSvvKQDRLLGL-LMPFRAFGDVKFKW--- 473  

                   lgpels.l.e..........rGifse.e....qpVsaePdvtsstkites
                   +++ + +  e+++++ +++++  f ++  +++++ +aeP+vt ++++ ++
     ej00665   474 SIDLQKrViEsgpdqlndneYTKFIPpNyhtpPYLTAEPEVT-YHRLRPQ 522  

                   kDeFliLAcDGlWDvvsdqeavdiv<-*
                    D+Fl+LA+DGlW+ +  q++v iv   
     ej00665   523 -DKFLVLATDGLWETMHRQDVVRIV    546  

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