hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-20041512/chunk_1/iprscan-20080808-20041512.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ej00702
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00386.12.ls C1q domain                                     156.2    7.7e-44   1
PF00386.12.fs C1q domain                                     154.4    2.8e-43   1
PF07546.3.ls EMI domain                                     106.7    6.2e-29   1
PF07546.3.fs EMI domain                                     104.9    2.2e-28   1
PF00008.17.fs EGF-like domain                                 39.1    4.6e-10   1
PF00008.17.ls EGF-like domain                                 40.9      4e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07546.3.fs   1/1     215   287 ..     1    84 []   104.9  2.2e-28
PF07546.3.ls   1/1     215   287 ..     1    84 []   106.7  6.2e-29
PF00008.17.ls   1/1    1053  1084 ..     1    38 []    40.9    4e-09
PF00008.17.fs   1/1    1053  1084 ..     1    38 []    39.1  4.6e-10
PF00386.12.fs   1/1    1110  1233 ..     1   138 []   154.4  2.8e-43
PF00386.12.ls   1/1    1110  1233 ..     1   138 []   156.2  7.7e-44

Alignments of top-scoring domains:
PF07546.3.fs: domain 1 of 1, from 215 to 287: score 104.9, E = 2.2e-28
                   *->grNvCayqevsryvvtvlesgsetfvqryytpCawpqpserhfiCsg
                      g+N+Cay++ +r+++tv++++++t+v  ++ pC+w+++s     C++
     ej00702   215    GKNWCAYVH-TRLSPTVILDNQVTYVPGGKGPCGWTGGS-----CPQ 255  

                   yEvrvsYRtayRpvyrtkyktvTslvwrCCPGysgsd<-*
                       +s+++++ pvyr+++k+vTsl+wrCCPGysg++   
     ej00702   256 ----RSQKISN-PVYRMQHKIVTSLDWRCCPGYSGPK    287  

PF07546.3.ls: domain 1 of 1, from 215 to 287: score 106.7, E = 6.2e-29
                   *->grNvCayqevsryvvtvlesgsetfvqryytpCawpqpserhfiCsg
                      g+N+Cay++ +r+++tv++++++t+v  ++ pC+w+++s     C++
     ej00702   215    GKNWCAYVH-TRLSPTVILDNQVTYVPGGKGPCGWTGGS-----CPQ 255  

                   yEvrvsYRtayRpvyrtkyktvTslvwrCCPGysgsd<-*
                       +s+++++ pvyr+++k+vTsl+wrCCPGysg++   
     ej00702   256 ----RSQKISN-PVYRMQHKIVTSLDWRCCPGYSGPK    287  

PF00008.17.ls: domain 1 of 1, from 1053 to 1084: score 40.9, E = 4e-09
                   *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-*
                      Cs +  pC+ngGtC+++++++tC C ++    +tG++C   
     ej00702  1053    CSRH--PCQNGGTCINGRTSFTCACRHP----FTGDNC    1084 

PF00008.17.fs: domain 1 of 1, from 1053 to 1084: score 39.1, E = 4.6e-10
                   *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-*
                      Cs +  pC+ngGtC+++++++tC C ++    +tG++C   
     ej00702  1053    CSRH--PCQNGGTCINGRTSFTCACRHP----FTGDNC    1084 

PF00386.12.fs: domain 1 of 1, from 1110 to 1233: score 154.4, E = 2.8e-43
                   *->AFSAglteslpppnqsgpygetpvvFdkvltNigghYdpaTGkFtCp
                      AF+A++t +++ p +       p+ F+   +N+g  Y p+TGkF+ p
     ej00702  1110    AFFASHTYGMTIP-G-------PILFNNLDVNYGASYTPRTGKFRIP 1148 

                   vpGvYyFsfhihskgvkeknlkvgLmkNgqevvstydqasngs.gkldva
                     GvY+F ++i+s+ ++ ++    L+++g++++++++++ n++ ++ +v 
     ej00702  1149 YLGVYVFKYTIESFSAHISGF---LVVDGIDKLAFESENINSEiHCDRVL 1195 

                   SgsvvLqLekGDeVWleldggernglysdegdtdstFSGFLL<-*
                   +g ++L+L++G+eVWl+l+    +g++++++ + +tFSG+LL   
     ej00702  1196 TGDALLELNYGQEVWLRLA----KGTIPAKFPPVTTFSGYLL    1233 

PF00386.12.ls: domain 1 of 1, from 1110 to 1233: score 156.2, E = 7.7e-44
                   *->AFSAglteslpppnqsgpygetpvvFdkvltNigghYdpaTGkFtCp
                      AF+A++t +++ p +       p+ F+   +N+g  Y p+TGkF+ p
     ej00702  1110    AFFASHTYGMTIP-G-------PILFNNLDVNYGASYTPRTGKFRIP 1148 

                   vpGvYyFsfhihskgvkeknlkvgLmkNgqevvstydqasngs.gkldva
                     GvY+F ++i+s+ ++ ++    L+++g++++++++++ n++ ++ +v 
     ej00702  1149 YLGVYVFKYTIESFSAHISGF---LVVDGIDKLAFESENINSEiHCDRVL 1195 

                   SgsvvLqLekGDeVWleldggernglysdegdtdstFSGFLL<-*
                   +g ++L+L++G+eVWl+l+    +g++++++ + +tFSG+LL   
     ej00702  1196 TGDALLELNYGQEVWLRLA----KGTIPAKFPPVTTFSGYLL    1233 

//