hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-20041512/chunk_1/iprscan-20080808-20041512.nocrc
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Query sequence: ej00702
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00110                                                 212.7    3.2e-59   1
SM00181                                                  37.2    2.2e-06   1
SM00179                                                  25.0     0.0013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00181    1/1    1052  1085 ..     1    32 []    37.2  2.2e-06
SM00179    1/1    1053  1085 ..     1    34 []    25.0   0.0013
SM00110    1/1    1102  1236 .]     1   146 []   212.7  3.2e-59

Alignments of top-scoring domains:
SM00181: domain 1 of 1, from 1052 to 1085: score 37.2, E = 2.2e-06
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                       C+++pC+nG     GtCi++++s+tC C+ + +tg++C    
     ej00702  1052    SCSrhPCQNG-----GTCIngrtSFTCaCR-HPFTGdNCT    1085 

SM00179: domain 1 of 1, from 1053 to 1085: score 25.0, E = 0.0013
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                          C+++pCqnGG   tCiN+  S++C C+  +t+ nC+   
     ej00702  1053    ----CsrhPCQNGG---TCINgRTSFTCaCRHPFTgDNCT    1085 

SM00110: domain 1 of 1, from 1102 to 1236: score 212.7, E = 3.2e-59
                   *->eykakprsAFsvilsyterpPpEmNpgqpirFdkvLyNqqghYdpsT
                      +y+++p++AF+++++y++++P+      pi+F+++++N++++Y+p+T
     ej00702  1102    SYRYAPMVAFFASHTYGMTIPG------PILFNNLDVNYGASYTPRT 1142 

                   GkFtCpvPGvYyFsYhievkgrRqnvkvsLmkngiqvlrvvstydeyqkg
                   GkF++p+ GvY+F+Y+ie++++  +++++L+++gi++l+++s++++++++
     ej00702  1143 GKFRIPYLGVYVFKYTIESFSA--HISGFLVVDGIDKLAFESENINSEIH 1190 

                   lydvaSGgalLqLeqGDqVWLelddeeknglyageevdSvFSGFLLfpd<
                   +++v++G+alL+L++G++VWL+l++   ++++a+++++++FSG+LL+++ 
     ej00702  1191 CDRVLTGDALLELNYGQEVWLRLAK---GTIPAKFPPVTTFSGYLLYRT  1236 

                   -*
                     
     ej00702     -    -    

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