hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-20301231/chunk_1/iprscan-20080808-20301231.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ej00786 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02946.5.ls GTF2I-like repeat 1069.6 0 6 PF02946.5.fs GTF2I-like repeat 1057.7 0 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02946.5.fs 1/6 230 305 .. 1 76 [] 172.9 1.6e-56 PF02946.5.ls 1/6 230 305 .. 1 76 [] 174.9 1.9e-49 PF02946.5.ls 2/6 459 534 .. 1 76 [] 175.1 1.6e-49 PF02946.5.fs 2/6 459 534 .. 1 76 [] 173.2 1.3e-56 PF02946.5.ls 3/6 564 639 .. 1 76 [] 187.2 3.8e-53 PF02946.5.fs 3/6 564 639 .. 1 76 [] 185.2 1.5e-60 PF02946.5.ls 4/6 669 744 .. 1 76 [] 185.5 1.2e-52 PF02946.5.fs 4/6 669 744 .. 1 76 [] 183.5 5.2e-60 PF02946.5.fs 5/6 831 906 .. 1 76 [] 177.4 5.2e-58 PF02946.5.ls 5/6 831 906 .. 1 76 [] 179.4 8.1e-51 PF02946.5.ls 6/6 966 1041 .. 1 76 [] 167.5 3.1e-47 PF02946.5.fs 6/6 966 1041 .. 1 76 [] 165.5 4.3e-54 Alignments of top-scoring domains: PF02946.5.fs: domain 1 of 6, from 230 to 305: score 172.9, E = 1.6e-56 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRk+Ve++F+++Yg+ALG++++V+VPYek+l++++av+V+GLPEG++ ej00786 230 LRKTVEDYFCFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVA 276 FRrPstYGiprLerILeakekIkFvIKRP<-* F++P++Y++++L++ILe+k++I+F+IKRP ej00786 277 FKHPENYDLATLKWILENKAGISFIIKRP 305 PF02946.5.ls: domain 1 of 6, from 230 to 305: score 174.9, E = 1.9e-49 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRk+Ve++F+++Yg+ALG++++V+VPYek+l++++av+V+GLPEG++ ej00786 230 LRKTVEDYFCFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVA 276 FRrPstYGiprLerILeakekIkFvIKRP<-* F++P++Y++++L++ILe+k++I+F+IKRP ej00786 277 FKHPENYDLATLKWILENKAGISFIIKRP 305 PF02946.5.ls: domain 2 of 6, from 459 to 534: score 175.1, E = 1.6e-49 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRkqVeeLF++KY++A+++k pV++PY++++s++e++yVeGLPEGIP ej00786 459 LRKQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIP 505 FRrPstYGiprLerILeakekIkFvIKRP<-* FRrPstYGiprLerIL ake+I+FvIK+ ej00786 506 FRRPSTYGIPRLERILLAKERIRFVIKKH 534 PF02946.5.fs: domain 2 of 6, from 459 to 534: score 173.2, E = 1.3e-56 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRkqVeeLF++KY++A+++k pV++PY++++s++e++yVeGLPEGIP ej00786 459 LRKQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIP 505 FRrPstYGiprLerILeakekIkFvIKRP<-* FRrPstYGiprLerIL ake+I+FvIK+ ej00786 506 FRRPSTYGIPRLERILLAKERIRFVIKKH 534 PF02946.5.ls: domain 3 of 6, from 564 to 639: score 187.2, E = 3.8e-53 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRk+V++LF++K++EALG +e+++VPY+k++++P+++yVeGLPE+IP ej00786 564 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIP 610 FRrPstYGiprLerILeakekIkFvIKRP<-* FR+Ps+YGiprLe+I+++ ++IkFvIKRP ej00786 611 FRSPSWYGIPRLEKIIQVGNRIKFVIKRP 639 PF02946.5.fs: domain 3 of 6, from 564 to 639: score 185.2, E = 1.5e-60 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRk+V++LF++K++EALG +e+++VPY+k++++P+++yVeGLPE+IP ej00786 564 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIP 610 FRrPstYGiprLerILeakekIkFvIKRP<-* FR+Ps+YGiprLe+I+++ ++IkFvIKRP ej00786 611 FRSPSWYGIPRLEKIIQVGNRIKFVIKRP 639 PF02946.5.ls: domain 4 of 6, from 669 to 744: score 185.5, E = 1.2e-52 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRkqVee+Fn K+++ALGl+e+VkVPY++++snPe++yVeGLPEGIP ej00786 669 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIP 715 FRrPstYGiprLerILeakekIkFvIKRP<-* FR+P+++GiprLerI++ ++kIkFv+K+P ej00786 716 FRSPTWFGIPRLERIVRGSNKIKFVVKKP 744 PF02946.5.fs: domain 4 of 6, from 669 to 744: score 183.5, E = 5.2e-60 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRkqVee+Fn K+++ALGl+e+VkVPY++++snPe++yVeGLPEGIP ej00786 669 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIP 715 FRrPstYGiprLerILeakekIkFvIKRP<-* FR+P+++GiprLerI++ ++kIkFv+K+P ej00786 716 FRSPTWFGIPRLERIVRGSNKIKFVVKKP 744 PF02946.5.fs: domain 5 of 6, from 831 to 906: score 177.4, E = 5.2e-58 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP L+++Ve+LFneK+gEALGlk++VkVP+++++s+Pe++yVeGLPEG+P ej00786 831 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVP 877 FRrPstYGiprLerILeakekIkFvIKRP<-* FRrPst+GiprLe+IL++k+kIkF+IK+P ej00786 878 FRRPSTFGIPRLEKILRNKAKIKFIIKKP 906 PF02946.5.ls: domain 5 of 6, from 831 to 906: score 179.4, E = 8.1e-51 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP L+++Ve+LFneK+gEALGlk++VkVP+++++s+Pe++yVeGLPEG+P ej00786 831 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVP 877 FRrPstYGiprLerILeakekIkFvIKRP<-* FRrPst+GiprLe+IL++k+kIkF+IK+P ej00786 878 FRRPSTFGIPRLEKILRNKAKIKFIIKKP 906 PF02946.5.ls: domain 6 of 6, from 966 to 1041: score 167.5, E = 3.1e-47 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LR+qV++LF++K+gEA+G+++pVkVPY+ki++nP++v+V+G+P+G++ ej00786 966 LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVS 1012 FRrPstYGiprLerILeakekIkFvIKRP<-* F++Ps+++i++++rIL+++e+IkF+++RP ej00786 1013 FKAPSYLEISSMRRILDSAEFIKFTVIRP 1041 PF02946.5.fs: domain 6 of 6, from 966 to 1041: score 165.5, E = 4.3e-54 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LR+qV++LF++K+gEA+G+++pVkVPY+ki++nP++v+V+G+P+G++ ej00786 966 LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVS 1012 FRrPstYGiprLerILeakekIkFvIKRP<-* F++Ps+++i++++rIL+++e+IkF+++RP ej00786 1013 FKAPSYLEISSMRRILDSAEFIKFTVIRP 1041 //