hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-21232795/chunk_1/iprscan-20080808-21232795.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ej00969 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 428.2 1.1e-125 13 PF00096.16.fs Zinc finger, C2H2 type 404.5 1.4e-118 14 PF01096.9.fs Transcription factor S-II (TFIIS) 47.3 6.2e-14 12 PF01286.9.fs XPA protein N-terminal 35.0 3.3e-09 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 2/13 307 329 .. 1 24 [] 37.3 4.9e-08 PF00096.16.fs 3/14 307 329 .. 1 24 [] 35.3 1.5e-07 PF00096.16.ls 3/13 335 357 .. 1 24 [] 37.0 6.1e-08 PF00096.16.fs 4/14 335 357 .. 1 24 [] 35.0 1.8e-07 PF00096.16.ls 4/13 363 385 .. 1 24 [] 29.0 1.5e-05 PF00096.16.fs 5/14 363 385 .. 1 24 [] 27.1 1.7e-05 PF00096.16.ls 5/13 391 413 .. 1 24 [] 35.4 1.8e-07 PF00096.16.fs 6/14 391 413 .. 1 24 [] 33.4 4.4e-07 PF00096.16.fs 7/14 419 441 .. 1 24 [] 35.7 1.2e-07 PF00096.16.ls 6/13 419 441 .. 1 24 [] 37.7 3.8e-08 PF00096.16.fs 8/14 447 469 .. 1 24 [] 35.2 1.6e-07 PF00096.16.ls 7/13 447 469 .. 1 24 [] 37.2 5.4e-08 PF00096.16.ls 8/13 475 497 .. 1 24 [] 31.5 2.7e-06 PF00096.16.fs 9/14 475 497 .. 1 24 [] 29.5 4.1e-06 PF00096.16.ls 9/13 503 525 .. 1 24 [] 34.0 4.7e-07 PF00096.16.fs 10/14 503 525 .. 1 24 [] 32.1 9.7e-07 PF00096.16.ls 10/13 531 553 .. 1 24 [] 36.4 9.4e-08 PF00096.16.fs 11/14 531 553 .. 1 24 [] 34.4 2.6e-07 PF00096.16.ls 11/13 559 581 .. 1 24 [] 35.8 1.3e-07 PF00096.16.fs 12/14 559 581 .. 1 24 [] 33.9 3.4e-07 PF00096.16.fs 13/14 587 609 .. 1 24 [] 31.4 1.5e-06 PF00096.16.ls 12/13 587 609 .. 1 24 [] 33.3 7.7e-07 PF00096.16.fs 14/14 615 637 .. 1 24 [] 37.1 5.4e-08 PF00096.16.ls 13/13 615 637 .. 1 24 [] 39.1 1.4e-08 Alignments of top-scoring domains: PF00096.16.ls: domain 2 of 13, from 307 to 329: score 37.3, E = 4.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFs++++L H+rtH ej00969 307 FECT-QCGKSFSQSYDLVIHQRTH 329 PF00096.16.fs: domain 3 of 14, from 307 to 329: score 35.3, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFs++++L H+rtH ej00969 307 FECT-QCGKSFSQSYDLVIHQRTH 329 PF00096.16.ls: domain 3 of 13, from 335 to 357: score 37.0, E = 6.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ CgksF+++s L +H+r+H ej00969 335 YECD-LCGKSFTQRSKLITHQRIH 357 PF00096.16.fs: domain 4 of 14, from 335 to 357: score 35.0, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ CgksF+++s L +H+r+H ej00969 335 YECD-LCGKSFTQRSKLITHQRIH 357 PF00096.16.ls: domain 4 of 13, from 363 to 385: score 29.0, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C ksF+ +snL H+r+H ej00969 363 YQCI-ECRKSFRWNSNLIVHQRIH 385 PF00096.16.fs: domain 5 of 14, from 363 to 385: score 27.1, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C ksF+ +snL H+r+H ej00969 363 YQCI-ECRKSFRWNSNLIVHQRIH 385 PF00096.16.ls: domain 5 of 13, from 391 to 413: score 35.4, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++++L +H+rtH ej00969 391 YECT-HCGKSFSQSYELVTHKRTH 413 PF00096.16.fs: domain 6 of 14, from 391 to 413: score 33.4, E = 4.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++++L +H+rtH ej00969 391 YECT-HCGKSFSQSYELVTHKRTH 413 PF00096.16.fs: domain 7 of 14, from 419 to 441: score 35.7, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksFs+k++L H+rtH ej00969 419 FKCT-QCGKSFSQKYDLVVHQRTH 441 PF00096.16.ls: domain 6 of 13, from 419 to 441: score 37.7, E = 3.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksFs+k++L H+rtH ej00969 419 FKCT-QCGKSFSQKYDLVVHQRTH 441 PF00096.16.fs: domain 8 of 14, from 447 to 469: score 35.2, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ CgksFs++s L +H+r+H ej00969 447 YECN-LCGKSFSQSSKLITHQRIH 469 PF00096.16.ls: domain 7 of 13, from 447 to 469: score 37.2, E = 5.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ CgksFs++s L +H+r+H ej00969 447 YECN-LCGKSFSQSSKLITHQRIH 469 PF00096.16.ls: domain 8 of 13, from 475 to 497: score 31.5, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF+ +snL H+r+H ej00969 475 YQCI-ECGKSFRWNSNLVIHQRIH 497 PF00096.16.fs: domain 9 of 14, from 475 to 497: score 29.5, E = 4.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF+ +snL H+r+H ej00969 475 YQCI-ECGKSFRWNSNLVIHQRIH 497 PF00096.16.ls: domain 9 of 13, from 503 to 525: score 34.0, E = 4.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFs++++L +H+rtH ej00969 503 YDCT-HCGKSFSQSYQLVAHKRTH 525 PF00096.16.fs: domain 10 of 14, from 503 to 525: score 32.1, E = 9.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFs++++L +H+rtH ej00969 503 YDCT-HCGKSFSQSYQLVAHKRTH 525 PF00096.16.ls: domain 10 of 13, from 531 to 553: score 36.4, E = 9.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r+ +L rHl++H ej00969 531 YECN-ECGKAFNRSTQLIRHLQIH 553 PF00096.16.fs: domain 11 of 14, from 531 to 553: score 34.4, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r+ +L rHl++H ej00969 531 YECN-ECGKAFNRSTQLIRHLQIH 553 PF00096.16.ls: domain 11 of 13, from 559 to 581: score 35.8, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F r+s L +H+rtH ej00969 559 YKCN-QCNKAFARSSYLVMHQRTH 581 PF00096.16.fs: domain 12 of 14, from 559 to 581: score 33.9, E = 3.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F r+s L +H+rtH ej00969 559 YKCN-QCNKAFARSSYLVMHQRTH 581 PF00096.16.fs: domain 13 of 14, from 587 to 609: score 31.4, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs +snL +H r+H ej00969 587 FECS-QCGKAFSGSSNLLSHHRIH 609 PF00096.16.ls: domain 12 of 13, from 587 to 609: score 33.3, E = 7.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs +snL +H r+H ej00969 587 FECS-QCGKAFSGSSNLLSHHRIH 609 PF00096.16.fs: domain 14 of 14, from 615 to 637: score 37.1, E = 5.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgksF+++s+L H+rtH ej00969 615 YECS-DCGKSFRQQSQLVVHRRTH 637 PF00096.16.ls: domain 13 of 13, from 615 to 637: score 39.1, E = 1.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgksF+++s+L H+rtH ej00969 615 YECS-DCGKSFRQQSQLVVHRRTH 637 //