hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-21295642/chunk_1/iprscan-20080808-21295642.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ej00975 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00246.14.ls Zinc carboxypeptidase 273.4 4.2e-79 1 PF00246.14.fs Zinc carboxypeptidase 271.4 1.6e-78 1 PF00754.15.ls F5/8 type C domain 139.1 1.1e-38 1 PF00754.15.fs F5/8 type C domain 137.3 1.8e-38 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02818.5.ls 1/1 335 361 .. 1 28 [] 0.1 18 PF00754.15.fs 1/1 413 551 .. 1 163 [] 137.3 1.8e-38 PF00754.15.ls 1/1 413 551 .. 1 163 [] 139.1 1.1e-38 PF00246.14.ls 1/1 584 910 .. 1 324 [] 273.4 4.2e-79 PF00246.14.fs 1/1 584 910 .. 1 324 [] 271.4 1.6e-78 Alignments of top-scoring domains: PF02818.5.ls: domain 1 of 1, from 335 to 361: score 0.1, E = 18 *->PPpKVPEvPKkvVpEEKvpvpvpkkeea<-* PPp P ++ EEK + pkke ej00975 335 PPPQKP-DAERQTDEEKEELKKPKKEDS 361 PF00754.15.fs: domain 1 of 1, from 413 to 551: score 137.3, E = 1.8e-38 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse qi aSs +++ ga+r+rL+++ +a D+ +++aW++ ej00975 413 QIRASSMLRHGLGAQRGRLNMQTGATEDDY---------YDGAWCA- 449 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggn.gyvksYkiqyS ++ ++ qw++vD +++++tgv+tqgr ++ ++ +v+++ + S ej00975 450 ED------DARTQWIEVDTRRTTRFTGVITQGRDSSIHdDFVTTFFVGFS 493 dDGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikAR +D + +W + + g ++++F+gn d d+pv +++p++AR ej00975 494 NDS-Q--TWVMYTN--------GYeEMTFhGNvDKDtPVLSELPEPVVAR 532 YvRivptswnggggiasraEl<-* ++Ri+p++w +g+ ++r E+ ej00975 533 FIRIYPLTW--NGSLCMRLEV 551 PF00754.15.ls: domain 1 of 1, from 413 to 551: score 139.1, E = 1.1e-38 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse qi aSs +++ ga+r+rL+++ +a D+ +++aW++ ej00975 413 QIRASSMLRHGLGAQRGRLNMQTGATEDDY---------YDGAWCA- 449 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggn.gyvksYkiqyS ++ ++ qw++vD +++++tgv+tqgr ++ ++ +v+++ + S ej00975 450 ED------DARTQWIEVDTRRTTRFTGVITQGRDSSIHdDFVTTFFVGFS 493 dDGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikAR +D + +W + + g ++++F+gn d d+pv +++p++AR ej00975 494 NDS-Q--TWVMYTN--------GYeEMTFhGNvDKDtPVLSELPEPVVAR 532 YvRivptswnggggiasraEl<-* ++Ri+p++w +g+ ++r E+ ej00975 533 FIRIYPLTW--NGSLCMRLEV 551 PF00246.14.ls: domain 1 of 1, from 584 to 910: score 273.4, E = 4.2e-79 *->ieawldelaaayPdlvrlvsiGkSvEGRpllvlkiskg....gpgkp + ++++ +++++P ++r +s+GkS G +++++is+++++++ g+p ej00975 584 MRQLMKVVNEECPTITRTYSLGKSSRGLKIYAMEISDNpgehELGEP 630 avlidagiHarEwigpatalylineLlsnY.gndpevtrLldktdfyivP ++ ++agiH++E+ g++++l l+++L+++Y++ +p+v+ L+++t++++vP ej00975 631 EFRYTAGIHGNEVLGRELLLLLMQYLCREYrDGNPRVRSLVQDTRIHLVP 680 vvNPDGyeythttgrinqdgRgq..geslWRKnRsnantecggssCiGvD ++NPDGye + ++++++ W + ++ G+D ej00975 681 SLNPDGYEVAAQ----------MgsEFGNWALGLWTEE---------GFD 711 LNRNFpflWgev..G...........paSsnPcsetYrGpspfSePEtrA + +Fp+l ++v G ++++ + + p+++ P +e+Y p + + E+rA ej00975 712 IFEDFPDL-NSVlwGaeerkwvpyrvPNNNLPIPERYLSPDATVSTEVRA 760 vadfirsvneeklgriklyidlHsysqliliYPYgytssgsetgyyt.ss +++++++ ++++l ++l ++++l++ YPY+ +++++ + ++ + ej00975 761 IIAWMEK------NPFVLGANLNGGERLVS-YPYDMARTPTQEQLLAaAM 803 ........e.v.enelppddeelkelakaaakal.kmvy.....Gtesdy +++++++v+e++ +pd++ +++la ++a+a+ + + + +++ + +dy ej00975 804 aaargedeDeVsEAQETPDHAIFRWLAISFASAHlTLTEpyrggCQAQDY 853 .ftyGitngdtliYpasGgsdDWaygelgikysyTlELrdtgnswyGFll + Gi ng+ + p +G+ D++y ++++ ++ ++L++++ ++ ej00975 854 tGGMGIVNGAK-WNPRTGTINDFSYLHTNC-LELSFYLGCDK------FP 895 pasqiiptgeetlea<-* ++s++++++e+++ea ej00975 896 HESELPREWENNKEA 910 PF00246.14.fs: domain 1 of 1, from 584 to 910: score 271.4, E = 1.6e-78 *->ieawldelaaayPdlvrlvsiGkSvEGRpllvlkiskg....gpgkp + ++++ +++++P ++r +s+GkS G +++++is+++++++ g+p ej00975 584 MRQLMKVVNEECPTITRTYSLGKSSRGLKIYAMEISDNpgehELGEP 630 avlidagiHarEwigpatalylineLlsnY.gndpevtrLldktdfyivP ++ ++agiH++E+ g++++l l+++L+++Y++ +p+v+ L+++t++++vP ej00975 631 EFRYTAGIHGNEVLGRELLLLLMQYLCREYrDGNPRVRSLVQDTRIHLVP 680 vvNPDGyeythttgrinqdgRgq..geslWRKnRsnantecggssCiGvD ++NPDGye + ++++++ W + ++ G+D ej00975 681 SLNPDGYEVAAQ----------MgsEFGNWALGLWTEE---------GFD 711 LNRNFpflWgev..G...........paSsnPcsetYrGpspfSePEtrA + +Fp+l ++v G ++++ + + p+++ P +e+Y p + + E+rA ej00975 712 IFEDFPDL-NSVlwGaeerkwvpyrvPNNNLPIPERYLSPDATVSTEVRA 760 vadfirsvneeklgriklyidlHsysqliliYPYgytssgsetgyyt.ss +++++++ ++++l ++l ++++l++ YPY+ +++++ + ++ + ej00975 761 IIAWMEK------NPFVLGANLNGGERLVS-YPYDMARTPTQEQLLAaAM 803 ........e.v.enelppddeelkelakaaakal.kmvy.....Gtesdy +++++++v+e++ +pd++ +++la ++a+a+ + + + +++ + +dy ej00975 804 aaargedeDeVsEAQETPDHAIFRWLAISFASAHlTLTEpyrggCQAQDY 853 .ftyGitngdtliYpasGgsdDWaygelgikysyTlELrdtgnswyGFll + Gi ng+ + p +G+ D++y ++++ ++ ++L++++ ++ ej00975 854 tGGMGIVNGAK-WNPRTGTINDFSYLHTNC-LELSFYLGCDK------FP 895 pasqiiptgeetlea<-* ++s++++++e+++ea ej00975 896 HESELPREWENNKEA 910 //