hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-21364731/chunk_1/iprscan-20080808-21364731.nocrc
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Query sequence: ej00993
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    149.0    1.2e-49   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    150.8    3.3e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      77   319 ..     1   272 []   149.0  1.2e-49
PF00001.12.ls   1/1      77   319 ..     1   272 []   150.8  3.3e-42

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 77 to 319: score 149.0, E = 1.2e-49
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      +Nl+V+++i+++ k ++ +++fi+NLA+ DLL +++  + +l+    
     ej00993    77    ENLMVLIAIWKNNKFHNRMYFFIGNLALCDLLAGIAYKVNILMSGKK 123  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +  +++ ++ l  ++++v++ aS ++L+aI+i+R+l+ ++   y +  
     ej00993   124 --TFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANK 171  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +   r +++i+ +W++a+ l+ +p+l++++ ++           C+   p
     ej00993   172 R--HRVFLLIGMCWLIAFTLGALPILGWNCLHNLPD--------CSTILP 211  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                     s           ++ +++  F   l+ i+++Y rI+  ++++ rk a 
     ej00993   212 LYS---------KKYIAFCISIFTAILVTIVILYARIYFLVKSSSRKVAN 252  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                   + +s + + +++t+++vv+vF+ CW P+fi++l+d+ c+           
     ej00993   253 HNNSERSMALLRTVVIVVSVFIACWSPLFILFLIDVACrVQA-------- 294  

                   ervlptallvtlwLayvNsclNPiIY<-*
                    + + +  +++++La++Ns++NP+IY   
     ej00993   295 -CPILFKAQWFIVLAVLNSAMNPVIY    319  

PF00001.12.ls: domain 1 of 1, from 77 to 319: score 150.8, E = 3.3e-42
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      +Nl+V+++i+++ k ++ +++fi+NLA+ DLL +++  + +l+    
     ej00993    77    ENLMVLIAIWKNNKFHNRMYFFIGNLALCDLLAGIAYKVNILMSGKK 123  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +  +++ ++ l  ++++v++ aS ++L+aI+i+R+l+ ++   y +  
     ej00993   124 --TFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANK 171  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +   r +++i+ +W++a+ l+ +p+l++++ ++           C+   p
     ej00993   172 R--HRVFLLIGMCWLIAFTLGALPILGWNCLHNLPD--------CSTILP 211  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                     s           ++ +++  F   l+ i+++Y rI+  ++++ rk a 
     ej00993   212 LYS---------KKYIAFCISIFTAILVTIVILYARIYFLVKSSSRKVAN 252  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                   + +s + + +++t+++vv+vF+ CW P+fi++l+d+ c+           
     ej00993   253 HNNSERSMALLRTVVIVVSVFIACWSPLFILFLIDVACrVQA-------- 294  

                   ervlptallvtlwLayvNsclNPiIY<-*
                    + + +  +++++La++Ns++NP+IY   
     ej00993   295 -CPILFKAQWFIVLAVLNSAMNPVIY    319  

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