hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-13452406/chunk_1/iprscan-20090525-13452406.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ej01005 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04928.8.ls Poly(A) polymerase central domain 620.4 1.5e-183 1 PF04928.8.fs Poly(A) polymerase central domain 618.4 5.9e-183 1 PF04926.5.fs Poly(A) polymerase predicted RNA binding 262.3 2.8e-77 1 PF04926.5.ls Poly(A) polymerase predicted RNA binding 264.0 2.8e-76 1 PF01909.13.fs Nucleotidyltransferase domain 56.9 1.6e-17 1 PF01909.13.ls Nucleotidyltransferase domain 58.7 1.7e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04928.8.ls 1/1 51 399 .. 1 264 [] 620.4 1.5e-183 PF04928.8.fs 1/1 51 399 .. 1 264 [] 618.4 5.9e-183 PF01909.13.fs 1/1 116 209 .. 1 117 [] 56.9 1.6e-17 PF01909.13.ls 1/1 116 209 .. 1 117 [] 58.7 1.7e-14 PF04926.5.fs 1/1 400 542 .. 1 191 [] 262.3 2.8e-77 PF04926.5.ls 1/1 400 542 .. 1 191 [] 264.0 2.8e-76 Alignments of top-scoring domains: PF04928.8.ls: domain 1 of 1, from 51 to 399: score 620.4, E = 1.5e-183 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->tktyGVTePIStagPtpaDiklteeLikeLkaeGlFEseeEtkkRee +k+yG+T+PIS+a P++ D++lt++Li++Lk++G+FE+eeE+++R+ ej01005 51 QKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQRRIL 97 RF xxxxxxxxxxxxxxx VLgkLnqlVkewVke................................... +LgkLn+lVkew++e +++++ + + ++ +++ + ++ + + ++++ + ej01005 98 ILGKLNNLVKEWIREisesknlpqsvienvggkiftfgsyrlgvhtkgad 147 RF .................................................. + +++ ++++ ++ ++ + ++ ++ + ++ + + ++ ej01005 148 idalcvaprhvdrsdfftsfydklklqeevkdlraveeafvpviklcfdg 197 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ..........alprvPddldLldDslLrnlDektvRSLNGcRVTDeILrL + + + al+++P+dldL+dDslL+nlD +++RSLNGcRVTDeIL+L ej01005 198 ieidilfarlALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHL 247 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx VPVnkevFrtaLRaIKlWAKrRgIYSNvlGFpGGVaWAiLVARiCQLYPN VP n+++Fr++LRaIKlWAKr++IYSN+lGF+GGV+WA+LVAR+CQLYPN ej01005 248 VP-NIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPN 296 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx AvpStLVskFFriysqWlSRHkWPnPVlLkaieegrngrilLqlrVWDPr A++StLV+kFF+++s+W +WPnPVlLk++ee+ n L+l+VWDPr ej01005 297 AIASTLVHKFFLVFSKW----EWPNPVLLKQPEEC-N----LNLPVWDPR 337 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lnpsDrlHlMPIITPAYPsMNsTHNVtrSTlkvIleEfkrGheIcdeIee +npsDr+HlMPIITPAYP++NsT+NV+ ST+ v++eEfk+G++I+deI++ ej01005 338 VNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILL 387 RF xxxxxxxxxxxx gkatWsdLFEph<-* ka+Ws+LFE++ ej01005 388 SKAEWSKLFEAP 399 PF04928.8.fs: domain 1 of 1, from 51 to 399: score 618.4, E = 5.9e-183 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->tktyGVTePIStagPtpaDiklteeLikeLkaeGlFEseeEtkkRee +k+yG+T+PIS+a P++ D++lt++Li++Lk++G+FE+eeE+++R+ ej01005 51 QKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQRRIL 97 RF xxxxxxxxxxxxxxx VLgkLnqlVkewVke................................... +LgkLn+lVkew++e +++++ + + ++ +++ + ++ + + ++++ + ej01005 98 ILGKLNNLVKEWIREisesknlpqsvienvggkiftfgsyrlgvhtkgad 147 RF .................................................. + +++ ++++ ++ ++ + ++ ++ + ++ + + ++ ej01005 148 idalcvaprhvdrsdfftsfydklklqeevkdlraveeafvpviklcfdg 197 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ..........alprvPddldLldDslLrnlDektvRSLNGcRVTDeILrL + + + al+++P+dldL+dDslL+nlD +++RSLNGcRVTDeIL+L ej01005 198 ieidilfarlALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHL 247 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx VPVnkevFrtaLRaIKlWAKrRgIYSNvlGFpGGVaWAiLVARiCQLYPN VP n+++Fr++LRaIKlWAKr++IYSN+lGF+GGV+WA+LVAR+CQLYPN ej01005 248 VP-NIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPN 296 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx AvpStLVskFFriysqWlSRHkWPnPVlLkaieegrngrilLqlrVWDPr A++StLV+kFF+++s+W +WPnPVlLk++ee+ n L+l+VWDPr ej01005 297 AIASTLVHKFFLVFSKW----EWPNPVLLKQPEEC-N----LNLPVWDPR 337 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lnpsDrlHlMPIITPAYPsMNsTHNVtrSTlkvIleEfkrGheIcdeIee +npsDr+HlMPIITPAYP++NsT+NV+ ST+ v++eEfk+G++I+deI++ ej01005 338 VNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILL 387 RF xxxxxxxxxxxx gkatWsdLFEph<-* ka+Ws+LFE++ ej01005 388 SKAEWSKLFEAP 399 PF01909.13.fs: domain 1 of 1, from 116 to 209: score 56.9, E = 1.6e-17 *->lkkikeilkelygavaevylfGSyarGtylpgdSDIDllvvspdpvd k + +++ e+ + +++ fGSy+ G +++g DID l+v p++vd ej01005 116 SKNLPQSVIENV--GGKIFTFGSYRLGVHTKG-ADIDALCVAPRHVD 159 e.ef.alfslarlgkrikervkrleelaeiekeleellglevDlvtrekl +++f ++f +++ ++ +e+++l+++e +v+ kl ej01005 160 RsDFfTSF----------------YDKLKLQEEVKDLRAVEEAFVPVIKL 193 erilektaplvrreileervll<-* + +++ ++il+ r++l ej01005 194 CF------DGIEIDILFARLAL 209 PF01909.13.ls: domain 1 of 1, from 116 to 209: score 58.7, E = 1.7e-14 *->lkkikeilkelygavaevylfGSyarGtylpgdSDIDllvvspdpvd k + +++ e+ + +++ fGSy+ G +++g DID l+v p++vd ej01005 116 SKNLPQSVIENV--GGKIFTFGSYRLGVHTKG-ADIDALCVAPRHVD 159 e.ef.alfslarlgkrikervkrleelaeiekeleellglevDlvtrekl +++f ++f +++ ++ +e+++l+++e +v+ kl ej01005 160 RsDFfTSF----------------YDKLKLQEEVKDLRAVEEAFVPVIKL 193 erilektaplvrreileervll<-* + +++ ++il+ r++l ej01005 194 CF------DGIEIDILFARLAL 209 PF04926.5.fs: domain 1 of 1, from 400 to 542: score 262.3, E = 2.8e-77 *->nFFsrYKhYlqitaaAadtaedhLkWsGlVESKlRlLVlkLErnegI nFF++YKhY++++a+A+ t++++L+W+GlVESK+R+LV++LE+ne+I ej01005 400 NFFQKYKHYIVLLASAP-TEKQRLEWVGLVESKIRILVGSLEKNEFI 445 elAHpnPkkFedtyecssdeeaeniankyglekgedalkalklaedenne +lAH+nP++F+ ++e++ +ee ej01005 446 TLAHVNPQSFPAPKENPDKEE----------------------------- 466 EeaekvesKaevrltvwFIGLefekskksdevkklDItypiqeFknlCkn ++t+w IGL f+k+++s e++++D+ty+iq+F+ ++ ej01005 467 ------------FRTMWVIGLVFKKTENS-ENLSVDLTYDIQSFT---DT 500 vnrqasnvkgikegCqmeIdikhVKrkqLpdevfedglkRpkks<-* v+rqa+n k+++ + m+I+++hVKrkqL++ ++ ++l+++kk+ ej01005 501 VYRQAINSKMFEVD--MKIAAMHVKRKQLHQLLPNHVLQKKKKH 542 PF04926.5.ls: domain 1 of 1, from 400 to 542: score 264.0, E = 2.8e-76 *->nFFsrYKhYlqitaaAadtaedhLkWsGlVESKlRlLVlkLErnegI nFF++YKhY++++a+A+ t++++L+W+GlVESK+R+LV++LE+ne+I ej01005 400 NFFQKYKHYIVLLASAP-TEKQRLEWVGLVESKIRILVGSLEKNEFI 445 elAHpnPkkFedtyecssdeeaeniankyglekgedalkalklaedenne +lAH+nP++F+ ++e++ +ee ej01005 446 TLAHVNPQSFPAPKENPDKEE----------------------------- 466 EeaekvesKaevrltvwFIGLefekskksdevkklDItypiqeFknlCkn ++t+w IGL f+k+++s e++++D+ty+iq+F+ ++ ej01005 467 ------------FRTMWVIGLVFKKTENS-ENLSVDLTYDIQSFT---DT 500 vnrqasnvkgikegCqmeIdikhVKrkqLpdevfedglkRpkks<-* v+rqa+n k+++ + m+I+++hVKrkqL++ ++ ++l+++kk+ ej01005 501 VYRQAINSKMFEVD--MKIAAMHVKRKQLHQLLPNHVLQKKKKH 542 //