hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-21553484/chunk_1/iprscan-20080808-21553484.nocrc
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Query sequence: ej01034
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                 203.5    1.9e-56   3
SM00072                                                 173.5    2.1e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/3      63   141 ..     1    80 []    69.0  5.7e-16
SM00228    2/3     325   406 ..     1    80 []    66.0  4.7e-15
SM00228    3/3     540   613 ..     1    80 []    68.4  8.7e-16
SM00072    1/1     711   900 ..     1   203 []   173.5  2.1e-47

Alignments of top-scoring domains:
SM00228: domain 1 of 3, from 63 to 141: score 69.0, E = 5.7e-16
                   *->gglGfsivg............gifvssvvpGspAakaGrkslglLkv
                       g+G+ ++g++++++ +++++ i++s+v+pG+pA+         L++
     ej01034    63    RGFGIAVSGgrdnphfengetSIVISDVLPGGPADGL-------LQE 102  

                   GDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +D+++ VNG t++e++ h  av+ l+k+g+     +  ++v+R+    
     ej01034   103 NDRVVMVNG-TPMEDVLHSFAVQQLRKSGK-----VAAIVVKRPR    141  

SM00228: domain 2 of 3, from 325 to 406: score 66.0, E = 4.7e-15
                   *->gglGfsivg.............gifvssvvpGspAakaGrkslglLk
                      g++G+ +  ++ +++ + + ++ ifv++  + + A k+G+     L+
     ej01034   325    GPIGVLLMKsraneeyglrlgsQIFVKEMTRTGLATKDGN-----LH 366  

                   vGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +GD+Il++NG t++e+++  +a +l+ k++g     k++L+vlR++   
     ej01034   367 EGDIILKING-TVTENMSLTDARKLIEKSRG-----KLQLVVLRDS    406  

SM00228: domain 3 of 3, from 540 to 613: score 68.4, E = 8.7e-16
                   *->gglGfsivg....gifvssvvpGspAakaGrkslglLkvGDvIleVN
                       + G++++g+++ gifv+++++G+ A++ G      L++GD+Il+VN
     ej01034   540    DSVGLRLAGgndvGIFVAGIQEGTSAEQEG------LQEGDQILKVN 580  

                   GetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                     ++ +gl  e+av++l + ++   Ge vt++ + +    
     ej01034   581 T-QDFRGLVREDAVLYLLEIPK---GEMVTILAQSRA    613  

SM00072: domain 1 of 1, from 711 to 900: score 173.5, E = 2.1e-47
                   *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE
                      + R+ v+ +  ++++++l+a++     ++p+++++++++++++Rp++
     ej01034   711    GQRSGVKKNL-RKSREDLTAVVSVS-TKFPAYERVLLREAGFKRPVV 755  

                   vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnl.yYGTskesvrqva
                    +GP++D+++++L+ e++++++++k  +++  s+ ++ +++++ +vrq++
     ej01034   756 LFGPIADIAMEKLANELPDWFQTAKTEPKDAGSE-KsTGVVRLNTVRQII 804  

                   ekGKhclLDidpqgvkqlkkarRkselnpiviFIapPsleeleerlrgae
                   e++Kh+lLD++p +v+ l+++    ++ piviF   P+++++ + +r+  
     ej01034   805 EQDKHALLDVTPKAVDLLNYT----QWFPIVIFFN-PDSRQGVKTMRQ-- 847  

                   qRgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddledayYkeLk
                    R+ +t+++++++l+++a k+ + +   ahlF+++i++++ +d+++  Lk
     ej01034   848 -RLNPTSNKSSRKLFDQANKLKKTC---AHLFTATINLNSANDSWFGSLK 893  

                   eileaeq<-*
                   + ++++q   
     ej01034   894 DTIQHQQ    900  

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