hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-22150192/chunk_1/iprscan-20080808-22150192.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ej01088 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00362.8.ls Integrin, beta chain 1127.7 0 1 PF00362.8.fs Integrin, beta chain 1125.9 0 1 PF07965.3.fs Integrin beta tail domain 157.4 1.3e-49 2 PF07965.3.ls Integrin beta tail domain 159.0 1.1e-44 1 PF08725.1.fs Integrin beta cytoplasmic domain 110.3 2e-31 1 PF08725.1.ls Integrin beta cytoplasmic domain 112.3 1.3e-30 1 PF07974.3.ls EGF-like domain 87.7 3.3e-23 4 PF07974.3.fs EGF-like domain 80.9 1.4e-21 4 PF00008.17.fs EGF-like domain 28.6 4.2e-07 4 PF00008.17.ls EGF-like domain 28.7 1.9e-05 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00362.8.ls 1/1 129 559 .. 1 441 [] 1127.7 0 PF00362.8.fs 1/1 129 559 .. 1 441 [] 1125.9 0 PF07974.3.ls 2/4 611 648 .. 1 37 [] 20.7 0.0048 PF07974.3.ls 3/4 655 685 .. 1 37 [] 22.5 0.0014 PF07974.3.ls 4/4 694 725 .. 1 37 [] 33.4 7.2e-07 PF07974.3.fs 4/4 694 725 .. 1 37 [] 31.7 7.2e-08 PF07965.3.ls 1/1 735 823 .. 1 91 [] 159.0 1.1e-44 PF07965.3.fs 2/2 735 823 .. 1 91 [] 157.0 1.7e-49 PF08725.1.fs 1/1 847 892 .. 1 46 [] 110.3 2e-31 PF08725.1.ls 1/1 847 892 .. 1 46 [] 112.3 1.3e-30 Alignments of top-scoring domains: PF00362.8.ls: domain 1 of 1, from 129 to 559: score 1127.7, E = 0 *->SCeeCilvgPdCAWCtkenFtspGeptSeRCDtranLlakGCpadsI SC+eCi++gP+C+WCt+ +F+++G+ptS+RCD++++L++kGCp+d+I ej01088 129 SCGECIQAGPNCGWCTNSTFLQEGMPTSARCDDLEALKKKGCPPDDI 175 enPrSsaeiledkplsnr..GkGsrldgsditQlsPQelrlrLRPGeaqt enPr+s+ i+++k+++nr++G++++l+++ditQ++PQ+l+lrLR+Ge+qt ej01088 176 ENPRGSKDIKKNKNVTNRskGTAEKLKPEDITQIQPQQLVLRLRSGEPQT 225 FqlkvrraedYPVDLYYLMDLSySMkDDLenvksLGtdLareMrklTsdf F+lk++raedYP+DLYYLMDLSySMkDDLenvksLGtdL++eMr++Tsdf ej01088 226 FTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDF 275 RIGFGSFVDKtVsPfvsttPryekLrnPCpnkeqnCqPPFsFkHVLsLTd RIGFGSFV+KtV+P++sttP +kLrnPC++ eqnC++PFs+k+VLsLT+ ej01088 276 RIGFGSFVEKTVMPYISTTP--AKLRNPCTS-EQNCTSPFSYKNVLSLTN 322 dvdeFneeVgkQrISGNLDaPEGGFDAIlQaAVCkekIGWRNDvtRLLVF +++ Fne+VgkQrISGNLD+PEGGFDAI+Q+AVC++ IGWRN vtRLLVF ej01088 323 KGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVF 371 sTDagfHfAgDGKnvLgGIVlPNDGrCHLdsnnvYtmSttmDYPSvGqLv sTDagfHfAgDGK LgGIVlPNDG+CHL++n +YtmS+++DYPS+++Lv ej01088 372 STDAGFHFAGDGK--LGGIVLPNDGQCHLENN-MYTMSHYYDYPSIAHLV 418 eKLsenNIqpIFAVTeeqvplYeeLteLIPkSaVGeLseDSsNvvqLIid +KLsenNIq+IFAVTee++p+Y+eL++LIPkSaVG+Ls +SsNv+qLIid ej01088 419 QKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIID 468 AYnkLsSeVeLevsdlPeglnisytSKmfCknGvkspgqkgRGkCsgvkI AYn+LsSeV+Le+ +l eg++isy+S +CknGv+++g++ ++kCs+++I ej01088 469 AYNSLSSEVILENGKLSEGVTISYKS--YCKNGVNGTGEN-GRKCSNISI 515 gdtVsFeVsvtatkCppegqkhsiiIKPlGFtDelevqvhfiCdvC<-* gd+V+Fe+s+t +kCp+++ + s++I+PlGFt+e+ev +++iC+ C ej01088 516 GDEVQFEISITSNKCPKKD-SDSFKIRPLGFTEEVEVILQYICE-C 559 PF00362.8.fs: domain 1 of 1, from 129 to 559: score 1125.9, E = 0 *->SCeeCilvgPdCAWCtkenFtspGeptSeRCDtranLlakGCpadsI SC+eCi++gP+C+WCt+ +F+++G+ptS+RCD++++L++kGCp+d+I ej01088 129 SCGECIQAGPNCGWCTNSTFLQEGMPTSARCDDLEALKKKGCPPDDI 175 enPrSsaeiledkplsnr..GkGsrldgsditQlsPQelrlrLRPGeaqt enPr+s+ i+++k+++nr++G++++l+++ditQ++PQ+l+lrLR+Ge+qt ej01088 176 ENPRGSKDIKKNKNVTNRskGTAEKLKPEDITQIQPQQLVLRLRSGEPQT 225 FqlkvrraedYPVDLYYLMDLSySMkDDLenvksLGtdLareMrklTsdf F+lk++raedYP+DLYYLMDLSySMkDDLenvksLGtdL++eMr++Tsdf ej01088 226 FTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDF 275 RIGFGSFVDKtVsPfvsttPryekLrnPCpnkeqnCqPPFsFkHVLsLTd RIGFGSFV+KtV+P++sttP +kLrnPC++ eqnC++PFs+k+VLsLT+ ej01088 276 RIGFGSFVEKTVMPYISTTP--AKLRNPCTS-EQNCTSPFSYKNVLSLTN 322 dvdeFneeVgkQrISGNLDaPEGGFDAIlQaAVCkekIGWRNDvtRLLVF +++ Fne+VgkQrISGNLD+PEGGFDAI+Q+AVC++ IGWRN vtRLLVF ej01088 323 KGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVF 371 sTDagfHfAgDGKnvLgGIVlPNDGrCHLdsnnvYtmSttmDYPSvGqLv sTDagfHfAgDGK LgGIVlPNDG+CHL++n +YtmS+++DYPS+++Lv ej01088 372 STDAGFHFAGDGK--LGGIVLPNDGQCHLENN-MYTMSHYYDYPSIAHLV 418 eKLsenNIqpIFAVTeeqvplYeeLteLIPkSaVGeLseDSsNvvqLIid +KLsenNIq+IFAVTee++p+Y+eL++LIPkSaVG+Ls +SsNv+qLIid ej01088 419 QKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIID 468 AYnkLsSeVeLevsdlPeglnisytSKmfCknGvkspgqkgRGkCsgvkI AYn+LsSeV+Le+ +l eg++isy+S +CknGv+++g++ ++kCs+++I ej01088 469 AYNSLSSEVILENGKLSEGVTISYKS--YCKNGVNGTGEN-GRKCSNISI 515 gdtVsFeVsvtatkCppegqkhsiiIKPlGFtDelevqvhfiCdvC<-* gd+V+Fe+s+t +kCp+++ + s++I+PlGFt+e+ev +++iC+ C ej01088 516 GDEVQFEISITSNKCPKKD-SDSFKIRPLGFTEEVEVILQYICE-C 559 PF07974.3.ls: domain 2 of 4, from 611 to 648: score 20.7, E = 0.0048 *->C........CngshGtCvspngtstpcgkCvCdsgyed..kyqGadC C+++++++ C++ +G Cv cg+CvC + + ++ y+G+ C ej01088 611 CrkensseiCSN-NGECV--------CGQCVCRKRDNTneIYSGKFC 648 <-* ej01088 - - PF07974.3.ls: domain 3 of 4, from 655 to 685: score 22.5, E = 0.0014 *->C.......CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+++++ C+g +G+C c C+C++ y+G +C ej01088 655 CdrsngliCGG-NGVCK--------CRVCECNPN----YTGSAC 685 PF07974.3.ls: domain 4 of 4, from 694 to 725: score 33.4, E = 7.2e-07 *->C.......CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+ ++++ Cng +G+C+ cg C+C+++ k+qG +C ej01088 694 CeasngqiCNG-RGICE--------CGVCKCTDP---KFQGQTC 725 PF07974.3.fs: domain 4 of 4, from 694 to 725: score 31.7, E = 7.2e-08 *->C.......CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+ ++++ Cng +G+C+ cg C+C+++ k+qG +C ej01088 694 CeasngqiCNG-RGICE--------CGVCKCTDP---KFQGQTC 725 PF07965.3.ls: domain 1 of 1, from 735 to 823: score 159.0, E = 1.1e-44 *->CseykdCVeCkaFntGplkkaenCsdeCkhevitvvelrk.LPQpke C+e+k+CV+C+aFn+G++k+ +C +eC++++it ve r++LPQp++ ej01088 735 CAEHKECVQCRAFNKGEKKD--TCTQECSYFNITKVESRDkLPQPVQ 779 aegarlCkekDeddCwfyFtyeeddgegkvvvyVqkereCPegPn<-* ++ +CkekD ddCwfyFty+ + + ++v+v+V++++eCP+gP+ ej01088 780 PDPVSHCKEKDVDDCWFYFTYSVNGN-NEVMVHVVENPECPTGPD 823 PF07965.3.fs: domain 2 of 2, from 735 to 823: score 157.0, E = 1.7e-49 *->CseykdCVeCkaFntGplkkaenCsdeCkhevitvvelrk.LPQpke C+e+k+CV+C+aFn+G++k+ +C +eC++++it ve r++LPQp++ ej01088 735 CAEHKECVQCRAFNKGEKKD--TCTQECSYFNITKVESRDkLPQPVQ 779 aegarlCkekDeddCwfyFtyeeddgegkvvvyVqkereCPegPn<-* ++ +CkekD ddCwfyFty+ + + ++v+v+V++++eCP+gP+ ej01088 780 PDPVSHCKEKDVDDCWFYFTYSVNGN-NEVMVHVVENPECPTGPD 823 PF08725.1.fs: domain 1 of 1, from 847 to 892: score 110.3, E = 2e-31 *->KLLttihDrrEyakFEkErkkakWtkgeNPLYksAttTfqNPtYag< KLL+ ihDrrE+akFEkE+++akW++geNP+YksA+tT++NP+Y+g ej01088 847 KLLMIIHDRREFAKFEKEKMNAKWDTGENPIYKSAVTTVVNPKYEG 892 -* ej01088 - - PF08725.1.ls: domain 1 of 1, from 847 to 892: score 112.3, E = 1.3e-30 *->KLLttihDrrEyakFEkErkkakWtkgeNPLYksAttTfqNPtYag< KLL+ ihDrrE+akFEkE+++akW++geNP+YksA+tT++NP+Y+g ej01088 847 KLLMIIHDRREFAKFEKEKMNAKWDTGENPIYKSAVTTVVNPKYEG 892 -* ej01088 - - //