hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-22150192/chunk_1/iprscan-20080808-22150192.nocrc
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Query sequence: ej01088
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00187                                                1007.1   2.3e-298   1
SM00423                                                  44.8    1.1e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00423    1/1     121   171 ..     1    56 []    44.8  1.1e-08
SM00187    1/1     129   559 ..     1   447 []  1007.1 2.3e-298

Alignments of top-scoring domains:
SM00423: domain 1 of 1, from 121 to 171: score 44.8, E = 1.1e-08
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.....erCderrg
                      rC ++ ++sC+eC++a+++  CgWC+ ++++  ++ ++++rCd    
     ej01088   121    RCLKANAKSCGECIQAGPN--CGWCT-NSTFLQEgmptsARCD---- 160  

                   srqnwssgpssqCp<-*
                    ++ +     ++Cp   
     ej01088   161 DLEALKK---KGCP    171  

SM00187: domain 1 of 1, from 129 to 559: score 1007.1, E = 2.3e-298
                   *->sCeeCIqshpsCAWCtdenFtsgGep.saRCdsranLlakGCspesI
                      sC+eCIq++p+C+WCt+ +F ++G+p+saRCd+ ++L++kGC+p++I
     ej01088   129    SCGECIQAGPNCGWCTNSTFLQEGMPtSARCDDLEALKKKGCPPDDI 175  

                   eePkS.eeievledqpLsdkakgesessgqavQvsPQrvrLkLRpGepqn
                   e+P+++++i+ +++ ++++k+++e+  +++++Q++PQ++ L+LR Gepq+
     ej01088   176 ENPRGsKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQT 225  

                   FtLtvrqAedYPVDLYYLMDLSySMkDDLenLksLGddLaeeMkklTsNF
                   FtL++++AedYP+DLYYLMDLSySMkDDLen+ksLG+dL++eM+++Ts+F
     ej01088   226 FTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDF 275  

                   RLGFGSFVDKtVmPfvsTrPekLenPCpnyrldivCePPyGFkHvLsLTd
                   R+GFGSFV+KtVmP++sT+P kL+nPC++ +++  C++P+++k+vLsLT+
     ej01088   276 RIGFGSFVEKTVMPYISTTPAKLRNPCTS-EQN--CTSPFSYKNVLSLTN 322  

                   dteeFneeVkkQrISGNLDaPEGGFDAiMQaaVCteqIGWRedArrLLVF
                   + e Fne+V+kQrISGNLD+PEGGFDAiMQ+aVC+++IGWR+ ++rLLVF
     ej01088   323 KGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVF 371  

                   sTDagFHfAGDGKVLgGIvtPNDGqCHLdnnGveYTmSttqDYPSigqLa
                   sTDagFHfAGDGK LgGIv+PNDGqCHL+nn   YTmS+++DYPSi++L+
     ej01088   372 STDAGFHFAGDGK-LGGIVLPNDGQCHLENN--MYTMSHYYDYPSIAHLV 418  

                   qkLkenNInpIFAVTkkqvslYkeLsalIpDegSsvGvLseDSsNvVeLI
                   qkL+enNI++IFAVT++++++YkeL++lIp  +S+vG+Ls++SsNv++LI
     ej01088   419 QKLSENNIQTIFAVTEEFQPVYKELKNLIP--KSAVGTLSANSSNVIQLI 466  

                   kdaYnkIsSrVelednalvPegvsvtytsksCpgGvvepgtrrrrkCegv
                   +daYn++sS+V+le+ +l +egv+++y+s +C++Gv+++g++ +rkC+++
     ej01088   467 IDAYNSLSSEVILENGKL-SEGVTISYKS-YCKNGVNGTGEN-GRKCSNI 513  

                   kiGdtvsFeVtvtatkCppkpDqdkeqsirirPvGFseFmeLeveltflC
                    iGd+v+Fe+++t +kCp+k     + s++irP+GF+e  e+ev l+++C
     ej01088   514 SIGDEVQFEISITSNKCPKK----DSDSFKIRPLGFTE--EVEVILQYIC 557  

                   dC<-*
                   +C   
     ej01088   558 EC    559  

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