hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-22273969/chunk_1/iprscan-20080808-22273969.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ej01168 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00644.10.ls Poly(ADP-ribose) polymerase catalytic domain 419.9 3.2e-123 1 PF00644.10.fs Poly(ADP-ribose) polymerase catalytic domain 418.0 1.2e-122 1 PF00645.8.fs Poly(ADP-ribose) polymerase and DNA-Ligase Z 288.0 3.5e-85 2 PF00645.8.ls Poly(ADP-ribose) polymerase and DNA-Ligase Z 291.6 1.4e-84 2 PF02877.5.ls Poly(ADP-ribose) polymerase, regulatory doma 284.9 1.4e-82 1 PF02877.5.fs Poly(ADP-ribose) polymerase, regulatory doma 282.9 5.6e-82 1 PF05406.5.ls WGR domain 142.7 8.9e-40 1 PF05406.5.fs WGR domain 140.8 1.5e-39 1 PF08063.2.fs PADR1 (NUC008) domain 122.4 2.4e-37 1 PF08063.2.ls PADR1 (NUC008) domain 124.4 3.1e-34 1 PF00533.16.fs BRCA1 C Terminus (BRCT) domain 48.3 2.2e-13 1 PF00533.16.ls BRCA1 C Terminus (BRCT) domain 50.1 6.9e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00645.8.ls 1/2 14 92 .. 1 100 [] 141.7 1.8e-39 PF00645.8.fs 1/2 14 92 .. 1 100 [] 139.9 4e-41 PF00645.8.ls 2/2 118 202 .. 1 100 [] 149.9 6.3e-42 PF00645.8.fs 2/2 118 202 .. 1 100 [] 148.1 1.5e-43 PF08063.2.ls 1/1 281 334 .. 1 57 [] 124.4 3.1e-34 PF08063.2.fs 1/1 281 334 .. 1 57 [] 122.4 2.4e-37 PF00533.16.fs 1/1 387 465 .. 1 96 [] 48.3 2.2e-13 PF00533.16.ls 1/1 387 465 .. 1 96 [] 50.1 6.9e-12 PF05406.5.fs 1/1 550 635 .. 1 89 [] 140.8 1.5e-39 PF05406.5.ls 1/1 550 635 .. 1 89 [] 142.7 8.9e-40 PF02877.5.ls 1/1 664 797 .. 1 139 [] 284.9 1.4e-82 PF02877.5.fs 1/1 664 797 .. 1 139 [] 282.9 5.6e-82 PF00644.10.ls 1/1 799 1009 .. 1 241 [] 419.9 3.2e-123 PF00644.10.fs 1/1 799 1009 .. 1 241 [] 418.0 1.2e-122 Alignments of top-scoring domains: PF00645.8.ls: domain 1 of 2, from 14 to 92: score 141.7, E = 1.8e-39 *->EYAKsgRAgCKgrksCKknkeKIeKGeLRlGtwVvdpeigefgGkvp EYAKsgRA+CK+ C +e+I K++LR++++V ++++f+Gkvp ej01168 14 EYAKSGRASCKK---C---SESIPKDSLRMAIMV---QSPMFDGKVP 51 kWrHwgCfterqienvnellgkggegdaddCldGfeeLneapeDqEkvkk +W+H++Cf++ + + + dGf+eL +++Dq+kvkk ej01168 52 HWYHFSCFWKVGH---------SIRHPDVE-VDGFSEL--RWDDQQKVKK 89 aie<-* e ej01168 90 TAE 92 PF00645.8.fs: domain 1 of 2, from 14 to 92: score 139.9, E = 4e-41 *->EYAKsgRAgCKgrksCKknkeKIeKGeLRlGtwVvdpeigefgGkvp EYAKsgRA+CK+ C +e+I K++LR++++V ++++f+Gkvp ej01168 14 EYAKSGRASCKK---C---SESIPKDSLRMAIMV---QSPMFDGKVP 51 kWrHwgCfterqienvnellgkggegdaddCldGfeeLneapeDqEkvkk +W+H++Cf++ + + + dGf+eL +++Dq+kvkk ej01168 52 HWYHFSCFWKVGH---------SIRHPDVE-VDGFSEL--RWDDQQKVKK 89 aie<-* e ej01168 90 TAE 92 PF00645.8.ls: domain 2 of 2, from 118 to 202: score 149.9, E = 6.3e-42 *->EYAKsgRAgCKgrksCKknkeKIeKGeLRlGtwVvdpeigefgGkvp EYAKs+R++CKg C +eKIeKG++Rl +++vdpe++ ++G+++ ej01168 118 EYAKSNRSTCKG---C---MEKIEKGQVRLFKKMVDPEKP-QLGMID 157 kWrHwgCfterqienvnellgkggegdaddCldGfeeLneapeDqEkvkk W+H+gCf+++++e+++ ++e++a++ l+Gf+ L a eD+E +kk ej01168 158 RWYHPGCFVKNREELGF-----RPEYSASQ-LKGFSLL--ATEDKEALKK 199 aie<-* +++ ej01168 200 QLP 202 PF00645.8.fs: domain 2 of 2, from 118 to 202: score 148.1, E = 1.5e-43 *->EYAKsgRAgCKgrksCKknkeKIeKGeLRlGtwVvdpeigefgGkvp EYAKs+R++CKg C +eKIeKG++Rl +++vdpe++ ++G+++ ej01168 118 EYAKSNRSTCKG---C---MEKIEKGQVRLFKKMVDPEKP-QLGMID 157 kWrHwgCfterqienvnellgkggegdaddCldGfeeLneapeDqEkvkk W+H+gCf+++++e+++ ++e++a++ l+Gf+ L a eD+E +kk ej01168 158 RWYHPGCFVKNREELGF-----RPEYSASQ-LKGFSLL--ATEDKEALKK 199 aie<-* +++ ej01168 200 QLP 202 PF08063.2.ls: domain 1 of 1, from 281 to 334: score 124.4, E = 3.1e-34 *->LldRcaDlmlFGALgkCpvCsGfqLlfngsCraYvCtGdiSEWtKCt +ldR+aD+m+FGAL++C++CsG qL+f+++ aY+CtGd+++WtKC+ ej01168 281 ILDRVADGMVFGALLPCEECSG-QLVFKSD--AYYCTGDVTAWTKCM 324 fstkePpRkk<-* ++t++P+Rk+ ej01168 325 VKTQTPNRKE 334 PF08063.2.fs: domain 1 of 1, from 281 to 334: score 122.4, E = 2.4e-37 *->LldRcaDlmlFGALgkCpvCsGfqLlfngsCraYvCtGdiSEWtKCt +ldR+aD+m+FGAL++C++CsG qL+f+++ aY+CtGd+++WtKC+ ej01168 281 ILDRVADGMVFGALLPCEECSG-QLVFKSD--AYYCTGDVTAWTKCM 324 fstkePpRkk<-* ++t++P+Rk+ ej01168 325 VKTQTPNRKE 334 PF00533.16.fs: domain 1 of 1, from 387 to 465: score 48.3, E = 2.2e-13 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtsslskktt k+++++++ g+ + +++e+ +++ieklGGk+t+ +k ej01168 387 SaDKPLSNMKILT-LGKLSRNKDEV--KAMIEKLGGKLTGTANKASL 430 hvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldci ++ ++++ +e+ ++k +++ k+ +i++v+e++l d ej01168 431 CIS--TKKE------------VEKMNKK-MEEVKEANIRVVSEDFLQDVS 465 <-* ej01168 - - PF00533.16.ls: domain 1 of 1, from 387 to 465: score 50.1, E = 6.9e-12 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtsslskktt k+++++++ g+ + +++e+ +++ieklGGk+t+ +k ej01168 387 SaDKPLSNMKILT-LGKLSRNKDEV--KAMIEKLGGKLTGTANKASL 430 hvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldci ++ ++++ +e+ ++k +++ k+ +i++v+e++l d ej01168 431 CIS--TKKE------------VEKMNKK-MEEVKEANIRVVSEDFLQDVS 465 <-* ej01168 - - PF05406.5.fs: domain 1 of 1, from 550 to 635: score 140.8, E = 1.5e-39 *->mgkevYnvyLertDiarNnNkfYalqlle.dlfggfsvfrrWGRvGt +g++v++++L+++Di ++ N++Y+lqlle+d+++++++fr+WGRvGt ej01168 550 KGGKVFSATLGLVDIVKGTNSYYKLQLLEdDKENRYWIFRSWGRVGT 596 kkIGqskleeFdseedAikeFlkLfreKtkngYedWErrknfq<-* + IG +kle+++s+edAi++F+kL++eKt+n +++ +++++ ej01168 597 V-IGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHS---KNFTK 635 PF05406.5.ls: domain 1 of 1, from 550 to 635: score 142.7, E = 8.9e-40 *->mgkevYnvyLertDiarNnNkfYalqlle.dlfggfsvfrrWGRvGt +g++v++++L+++Di ++ N++Y+lqlle+d+++++++fr+WGRvGt ej01168 550 KGGKVFSATLGLVDIVKGTNSYYKLQLLEdDKENRYWIFRSWGRVGT 596 kkIGqskleeFdseedAikeFlkLfreKtkngYedWErrknfq<-* + IG +kle+++s+edAi++F+kL++eKt+n +++ +++++ ej01168 597 V-IGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHS---KNFTK 635 PF02877.5.ls: domain 1 of 1, from 664 to 797: score 284.9, E = 1.4e-82 *->kSKLdksvqdlIklifDvdSMaqtmmEfeiLsdmeKmPLGKlSkrqI kSKL+k+vqdlIk+ifDv+SM+++m+E+ei d++KmPLGKlSkrqI ej01168 664 KSKLPKPVQDLIKMIFDVESMKKAMVEYEI--DLQKMPLGKLSKRQI 708 qsaYrVlkeiyevisdGgseakLiDlsNrFYTLIPHdFGfkkPpqFlidt q aY++l e+++++s G+s ++++DlsNrFYTLIPHdFG+kkPp l+ + ej01168 709 QAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPP--LLNN 756 hekiqakrqMLDaLkGeIEvAysLlsledtasdkDPldrhYe<-* +qak++MLD+L+ +IEvAysLl+++ +s+kDP+d +Ye ej01168 757 ADSVQAKVEMLDNLL-DIEVAYSLLRGGSDDSSKDPIDVNYE 797 PF02877.5.fs: domain 1 of 1, from 664 to 797: score 282.9, E = 5.6e-82 *->kSKLdksvqdlIklifDvdSMaqtmmEfeiLsdmeKmPLGKlSkrqI kSKL+k+vqdlIk+ifDv+SM+++m+E+ei d++KmPLGKlSkrqI ej01168 664 KSKLPKPVQDLIKMIFDVESMKKAMVEYEI--DLQKMPLGKLSKRQI 708 qsaYrVlkeiyevisdGgseakLiDlsNrFYTLIPHdFGfkkPpqFlidt q aY++l e+++++s G+s ++++DlsNrFYTLIPHdFG+kkPp l+ + ej01168 709 QAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPP--LLNN 756 hekiqakrqMLDaLkGeIEvAysLlsledtasdkDPldrhYe<-* +qak++MLD+L+ +IEvAysLl+++ +s+kDP+d +Ye ej01168 757 ADSVQAKVEMLDNLL-DIEVAYSLLRGGSDDSSKDPIDVNYE 797 PF00644.10.ls: domain 1 of 1, from 799 to 1009: score 419.9, E = 3.2e-123 *->LkckklepLdkdSeEykmiekylknThapthggyeYsltivdIfrvq Lk+ +++++d+dSeE ++i ky+knTha th+ y +l+++dIf+++ ej01168 799 LKT-DIKVVDRDSEEAEIIRKYVKNTHATTHNAY--DLEVIDIFKIE 842 rdgEadrFqphkkqlekkkglkNvnrrLLWHGSrltNfagILsqGLrIap r+gE +r++p+k+ l+N rrLLWHGSr+tNfagILsqGLrIap ej01168 843 REGECQRYKPFKQ-------LHN--RRLLWHGSRTTNFAGILSQGLRIAP 883 peaPvtGymTDGFGKGiYFAdmaSkSaDnYcptseangsglrSllgmlLs peaPvtGym FGKGiYFAdm+SkSa nYc+ts++++ gl +lL+ ej01168 884 PEAPVTGYM---FGKGIYFADMVSKSA-NYCHTSQGDPIGL-----ILLG 924 eVALGdemneLtkadysaeklppgkhSvkGlGkttPawkdpsesfvdlDG eVALG+ m+eL++a + + klp+gkhSvkGlGkttP dps+ + lDG ej01168 925 EVALGN-MYELKHASH-ISKLPKGKHSVKGLGKTTP---DPSAN-ISLDG 968 vvvPlgklvptgykssvdytllynEYvVYdveQvrlkYLlevkf<-* v vPlg ++++g +++ llynEY+VYd +Qv+lkYLl++kf ej01168 969 VDVPLGTGISSGVNDTS---LLYNEYIVYDIAQVNLKYLLKLKF 1009 PF00644.10.fs: domain 1 of 1, from 799 to 1009: score 418.0, E = 1.2e-122 *->LkckklepLdkdSeEykmiekylknThapthggyeYsltivdIfrvq Lk+ +++++d+dSeE ++i ky+knTha th+ y +l+++dIf+++ ej01168 799 LKT-DIKVVDRDSEEAEIIRKYVKNTHATTHNAY--DLEVIDIFKIE 842 rdgEadrFqphkkqlekkkglkNvnrrLLWHGSrltNfagILsqGLrIap r+gE +r++p+k+ l+N rrLLWHGSr+tNfagILsqGLrIap ej01168 843 REGECQRYKPFKQ-------LHN--RRLLWHGSRTTNFAGILSQGLRIAP 883 peaPvtGymTDGFGKGiYFAdmaSkSaDnYcptseangsglrSllgmlLs peaPvtGym FGKGiYFAdm+SkSa nYc+ts++++ gl +lL+ ej01168 884 PEAPVTGYM---FGKGIYFADMVSKSA-NYCHTSQGDPIGL-----ILLG 924 eVALGdemneLtkadysaeklppgkhSvkGlGkttPawkdpsesfvdlDG eVALG+ m+eL++a + + klp+gkhSvkGlGkttP dps+ + lDG ej01168 925 EVALGN-MYELKHASH-ISKLPKGKHSVKGLGKTTP---DPSAN-ISLDG 968 vvvPlgklvptgykssvdytllynEYvVYdveQvrlkYLlevkf<-* v vPlg ++++g +++ llynEY+VYd +Qv+lkYLl++kf ej01168 969 VDVPLGTGISSGVNDTS---LLYNEYIVYDIAQVNLKYLLKLKF 1009 //