hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-06394115/chunk_1/iprscan-20090618-06394115.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ej01176 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00514.13.ls Armadillo/beta-catenin-like repeat 351.2 1.6e-102 8 PF00514.13.fs Armadillo/beta-catenin-like repeat 335.2 1.1e-97 8 PF01749.10.ls Importin beta binding domain 139.7 7.6e-39 1 PF01749.10.fs Importin beta binding domain 137.8 2.8e-38 1 PF02985.12.ls HEAT repeat 55.7 1.5e-13 5 PF02985.12.fs HEAT repeat 45.9 7.2e-12 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01749.10.fs 1/1 10 99 .. 1 101 [] 137.8 2.8e-38 PF01749.10.ls 1/1 10 99 .. 1 101 [] 139.7 7.6e-39 PF00514.13.fs 1/8 117 159 .. 1 41 [] 33.6 1.8e-08 PF00514.13.ls 1/8 117 159 .. 1 41 [] 35.6 1.6e-07 PF00514.13.ls 2/8 161 201 .. 1 41 [] 60.5 5.2e-15 PF00514.13.fs 2/8 161 201 .. 1 41 [] 58.4 1.8e-15 PF02985.12.ls 1/5 166 203 .. 1 36 [] 20.4 0.0059 PF00514.13.fs 3/8 203 244 .. 1 41 [] 40.8 1.6e-10 PF00514.13.ls 3/8 203 244 .. 1 41 [] 42.8 1e-09 PF00514.13.ls 4/8 246 286 .. 1 41 [] 33.5 6.7e-07 PF00514.13.fs 4/8 246 286 .. 1 41 [] 31.5 6.7e-08 PF00514.13.ls 5/8 288 328 .. 1 41 [] 43.4 7.3e-10 PF00514.13.fs 5/8 288 328 .. 1 41 [] 41.4 1.1e-10 PF00514.13.fs 6/8 330 370 .. 1 41 [] 49.8 5e-13 PF00514.13.ls 6/8 330 370 .. 1 41 [] 51.8 2.2e-12 PF02985.12.ls 4/5 335 372 .. 1 36 [] 21.1 0.0036 PF00514.13.ls 7/8 372 412 .. 1 41 [] 45.2 2e-10 PF00514.13.fs 7/8 372 412 .. 1 41 [] 43.2 3.5e-11 PF00514.13.fs 8/8 415 455 .. 1 41 [] 36.5 2.7e-09 PF00514.13.ls 8/8 415 455 .. 1 41 [] 38.5 2.2e-08 Alignments of top-scoring domains: PF01749.10.fs: domain 1 of 1, from 10 to 99: score 137.8, E = 2.8e-38 *->essnkeeyRrksYKNkgvdaeEmRRRReEvsVElRKnKREEqLlKRR +s++k++yR+ksYKN+++++eEmRRRReE++++lRK+KRE+qL+KRR ej01176 10 ASPGKDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRR 56 NvglpdedsaepdeseldgssdkeaasqlslelpvmvqgvnSdDpenqLs Nv l++e+ + ++d+ + +s++s+++ + v++++++++L+ ej01176 57 NVELINEE-----AAMFDSLLM---DSYVSSTT---GESVITREMVEMLF 95 atqa<-* ++++ ej01176 96 SDDS 99 PF01749.10.ls: domain 1 of 1, from 10 to 99: score 139.7, E = 7.6e-39 *->essnkeeyRrksYKNkgvdaeEmRRRReEvsVElRKnKREEqLlKRR +s++k++yR+ksYKN+++++eEmRRRReE++++lRK+KRE+qL+KRR ej01176 10 ASPGKDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRR 56 NvglpdedsaepdeseldgssdkeaasqlslelpvmvqgvnSdDpenqLs Nv l++e+ + ++d+ + +s++s+++ + v++++++++L+ ej01176 57 NVELINEE-----AAMFDSLLM---DSYVSSTT---GESVITREMVEMLF 95 atqa<-* ++++ ej01176 96 SDDS 99 PF00514.13.fs: domain 1 of 8, from 117 to 159: score 33.6, E = 1.8e-08 *->npenkqavv.eaGalppLvqLLs.spdeevqeeAawALsNLaa<-* +++++++v++ ++ ++v++L+++++ +q+eAawAL+N+a+ ej01176 117 PSPPIDEVInTPRVVDRFVEFLKrNENCTLQFEAAWALTNIAS 159 PF00514.13.ls: domain 1 of 8, from 117 to 159: score 35.6, E = 1.6e-07 *->npenkqavv.eaGalppLvqLLs.spdeevqeeAawALsNLaa<-* +++++++v++ ++ ++v++L+++++ +q+eAawAL+N+a+ ej01176 117 PSPPIDEVInTPRVVDRFVEFLKrNENCTLQFEAAWALTNIAS 159 PF00514.13.ls: domain 2 of 8, from 161 to 201: score 60.5, E = 5.2e-15 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* ++++++ v+eaGa+p++++LL+s+ e+vqe+A+wAL+N+a ej01176 161 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAG 201 PF00514.13.fs: domain 2 of 8, from 161 to 201: score 58.4, E = 1.8e-15 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* ++++++ v+eaGa+p++++LL+s+ e+vqe+A+wAL+N+a ej01176 161 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAG 201 PF02985.12.ls: domain 1 of 5, from 166 to 203: score 20.4, E = 0.0059 *->e.ild.ellplllkllnDpdpeVReaAaeaLgalaevl<-* + +++ +p++++lln++ ++V+e+A++aLg++a ej01176 166 KiVIEaGAVPIFIELLNSDFEDVQEQAVWALGNIAGDS 203 PF00514.13.fs: domain 3 of 8, from 203 to 244: score 40.8, E = 1.6e-10 *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-* ++ ++++v ++ +l pL+ LL++s+ + ++A+wALsNL++ ej01176 203 SSVCRDYVLNCSILNPLLTLLTkSTRLTMTRNAVWALSNLCR 244 PF00514.13.ls: domain 3 of 8, from 203 to 244: score 42.8, E = 1e-09 *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-* ++ ++++v ++ +l pL+ LL++s+ + ++A+wALsNL++ ej01176 203 SSVCRDYVLNCSILNPLLTLLTkSTRLTMTRNAVWALSNLCR 244 PF00514.13.ls: domain 4 of 8, from 246 to 286: score 33.5, E = 6.7e-07 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* +++ + + +lp+L +LL s+d++++ +A+wALs+L++ ej01176 246 KNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSD 286 PF00514.13.fs: domain 4 of 8, from 246 to 286: score 31.5, E = 6.7e-08 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* +++ + + +lp+L +LL s+d++++ +A+wALs+L++ ej01176 246 KNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSD 286 PF00514.13.ls: domain 5 of 8, from 288 to 328: score 43.4, E = 7.3e-10 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* ++e +qav+++G+ ++Lv+LL ++d +v +A++A++N+++ ej01176 288 PNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVT 328 PF00514.13.fs: domain 5 of 8, from 288 to 328: score 41.4, E = 1.1e-10 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* ++e +qav+++G+ ++Lv+LL ++d +v +A++A++N+++ ej01176 288 PNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVT 328 PF00514.13.fs: domain 6 of 8, from 330 to 370: score 49.8, E = 5e-13 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* ++ ++q++ ++ alp L++LLssp+e++++eA+w++sN++a ej01176 330 DDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTISNITA 370 PF00514.13.ls: domain 6 of 8, from 330 to 370: score 51.8, E = 2.2e-12 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* ++ ++q++ ++ alp L++LLssp+e++++eA+w++sN++a ej01176 330 DDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTISNITA 370 PF02985.12.ls: domain 4 of 5, from 335 to 372: score 21.1, E = 0.0036 *->e.ild.ellplllkllnDpdpeVReaAaeaLgalaevl<-* + il+ + lp+ll+ll++p +++R+ A+++++++ ej01176 335 QvILNcSALPCLLHLLSSPKESIRKEACWTISNITAGN 372 PF00514.13.ls: domain 7 of 8, from 372 to 412: score 45.2, E = 2e-10 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* n +++qav++a++ p+L++ L+ ++++++eAawA++N ++ ej01176 372 NRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATS 412 PF00514.13.fs: domain 7 of 8, from 372 to 412: score 43.2, E = 3.5e-11 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* n +++qav++a++ p+L++ L+ ++++++eAawA++N ++ ej01176 372 NRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATS 412 PF00514.13.fs: domain 8 of 8, from 415 to 455: score 36.5, E = 2.7e-09 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* +pe+++++v +G+++pL++LL+ +d++++++A+ L N+ + ej01176 415 TPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILR 455 PF00514.13.ls: domain 8 of 8, from 415 to 455: score 38.5, E = 2.2e-08 *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-* +pe+++++v +G+++pL++LL+ +d++++++A+ L N+ + ej01176 415 TPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILR 455 //