hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-22461480/chunk_1/iprscan-20080808-22461480.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00029 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07748.3.ls Glycosyl hydrolases family 38 C-termi 568.7 5.1e-168 1 PF07748.3.fs Glycosyl hydrolases family 38 C-termi 566.9 1.8e-167 1 PF01074.12.ls Glycosyl hydrolases family 38 N-termi 520.5 1.7e-153 1 PF01074.12.fs Glycosyl hydrolases family 38 N-termi 518.7 6.1e-153 1 PF09261.1.ls Alpha mannosidase, middle domain 110.4 4.8e-30 1 PF09261.1.fs Alpha mannosidase, middle domain 108.5 1.8e-29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01074.12.ls 1/1 60 378 .. 1 339 [] 520.5 1.7e-153 PF01074.12.fs 1/1 60 378 .. 1 339 [] 518.7 6.1e-153 PF09261.1.fs 1/1 382 461 .. 1 90 [] 108.5 1.8e-29 PF09261.1.ls 1/1 382 461 .. 1 90 [] 110.4 4.8e-30 PF07748.3.fs 1/1 506 997 .. 1 634 [] 566.9 1.8e-167 PF07748.3.ls 1/1 506 997 .. 1 634 [] 568.7 5.1e-168 Alignments of top-scoring domains: PF01074.12.ls: domain 1 of 1, from 60 to 378: score 520.5, E = 1.7e-153 *->kvhlvgHsHiDvaWLwtvdetYyGsnn.Iqrrkvqrtifsnvlklld +vhl++H+H+Dv+WL+tvd+++yG +n+Iq+++vq++ +++v+ +l+ ek00029 60 NVHLLPHTHDDVGWLKTVDQYFYGIKNdIQHAGVQYI-LDSVISALL 105 rypefrFyiqseaqfyewwwedqpelfkkiVKklVaeGrlEpvGGgWVep ++p +rF i++e++f+ +ww++q + +++V+ lV++GrlE+++GgWV++ ek00029 106 ADPTRRF-IYVEIAFFSRWWHQQTNATQEVVRDLVRQGRLEFANGGWVMN 154 DenlpsgeSliRQllyGqrffkeeFG.cvrprvgWlPDpFGySatlPqil De+++++ ++++Q+++G+rf++++FG+++rprv+W++DpFG+S+++++++ ek00029 155 DEAATHYGAIVDQMTLGLRFLEDTFGnDGRPRVAWHIDPFGHSREQASLF 204 kqaGidyfltqrlhwndknkfaeqphleFiWrgsdGl.tgeseilThmlp +q+G+d+f+++rl+++dk+ ++++ +e +Wr+s +l+ ++++++T++lp ek00029 205 AQMGFDGFFFGRLDYQDKWVRMQKLEMEQVWRASTSLkPPTADLFTGVLP 254 fdyydiphtCGpdptygfqfDFkrmpgeslcdddpivdpe.itdyNVker + y +p + ++D +lc+d+p v+++++++yN ke ek00029 255 NGYN-PP--------RNLCWD-------VLCVDQPLVEDPrSPEYNAKEL 288 aedlldqakkyadktrtnhvLlpfGdGFrYenaEwDggggptdelleyin ++ +l+ a+++ +++rtnh+ +++G++F+Yena ++++++ d+l++ +n ek00029 289 VDYFLNVATAQGRYYRTNHIVMTMGSDFQYENA--NMWFKNLDKLIQLVN 336 rlqelpglpkvqygTpsdYFdaleeeaaanetwptkdsgdfptyag<-* ++q++++ ++v y+Tp++Y++ l++ an+tw++k ++df++ya+ ek00029 337 AQQAKGSSVHVLYSTPACYLWELNK---ANLTWSVK-HDDFFPYAD 378 PF01074.12.fs: domain 1 of 1, from 60 to 378: score 518.7, E = 6.1e-153 *->kvhlvgHsHiDvaWLwtvdetYyGsnn.Iqrrkvqrtifsnvlklld +vhl++H+H+Dv+WL+tvd+++yG +n+Iq+++vq++ +++v+ +l+ ek00029 60 NVHLLPHTHDDVGWLKTVDQYFYGIKNdIQHAGVQYI-LDSVISALL 105 rypefrFyiqseaqfyewwwedqpelfkkiVKklVaeGrlEpvGGgWVep ++p +rF i++e++f+ +ww++q + +++V+ lV++GrlE+++GgWV++ ek00029 106 ADPTRRF-IYVEIAFFSRWWHQQTNATQEVVRDLVRQGRLEFANGGWVMN 154 DenlpsgeSliRQllyGqrffkeeFG.cvrprvgWlPDpFGySatlPqil De+++++ ++++Q+++G+rf++++FG+++rprv+W++DpFG+S+++++++ ek00029 155 DEAATHYGAIVDQMTLGLRFLEDTFGnDGRPRVAWHIDPFGHSREQASLF 204 kqaGidyfltqrlhwndknkfaeqphleFiWrgsdGl.tgeseilThmlp +q+G+d+f+++rl+++dk+ ++++ +e +Wr+s +l+ ++++++T++lp ek00029 205 AQMGFDGFFFGRLDYQDKWVRMQKLEMEQVWRASTSLkPPTADLFTGVLP 254 fdyydiphtCGpdptygfqfDFkrmpgeslcdddpivdpe.itdyNVker + y +p + ++D +lc+d+p v+++++++yN ke ek00029 255 NGYN-PP--------RNLCWD-------VLCVDQPLVEDPrSPEYNAKEL 288 aedlldqakkyadktrtnhvLlpfGdGFrYenaEwDggggptdelleyin ++ +l+ a+++ +++rtnh+ +++G++F+Yena ++++++ d+l++ +n ek00029 289 VDYFLNVATAQGRYYRTNHIVMTMGSDFQYENA--NMWFKNLDKLIQLVN 336 rlqelpglpkvqygTpsdYFdaleeeaaanetwptkdsgdfptyag<-* ++q++++ ++v y+Tp++Y++ l++ an+tw++k ++df++ya+ ek00029 337 AQQAKGSSVHVLYSTPACYLWELNK---ANLTWSVK-HDDFFPYAD 378 PF09261.1.fs: domain 1 of 1, from 382 to 461: score 108.5, E = 1.8e-29 *->EyHrGyYTSrpalKrlnRqlEslLraaElLsslasilggdnqenevi ++++Gy+ SrpalKr++R + ++L+++ +L++l+++ ++ ek00029 382 QFWTGYFSSRPALKRYERLSYNFLQVCNQLEALVGLAANV------- 421 lkdykypkeeLeelWkalllnQFHDilPGssiqeVydDyakrl<-* ++y + + l +a++++Q+HD+++G+s+q+V++Dya++l ek00029 422 ---GPYGSGDSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQL 461 PF09261.1.ls: domain 1 of 1, from 382 to 461: score 110.4, E = 4.8e-30 *->EyHrGyYTSrpalKrlnRqlEslLraaElLsslasilggdnqenevi ++++Gy+ SrpalKr++R + ++L+++ +L++l+++ ++ ek00029 382 QFWTGYFSSRPALKRYERLSYNFLQVCNQLEALVGLAANV------- 421 lkdykypkeeLeelWkalllnQFHDilPGssiqeVydDyakrl<-* ++y + + l +a++++Q+HD+++G+s+q+V++Dya++l ek00029 422 ---GPYGSGDSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQL 461 PF07748.3.fs: domain 1 of 1, from 506 to 997: score 566.9, E = 1.8e-167 *->epvvvfNpLawtrnevVripvsspnvsv.desgeiteailaeedsgk ++v+v+NpL++++n++Vr+pvs++++ v+d + g+ ek00029 506 FQVIVYNPLGRKVNWMVRLPVSEGVFVVkDPN-------------GR 539 pvesQivpvpsiveelrytaylgrsrtsttkyellFllaevPplGyatyk +v+s++v +ps + +++ ellF a++P+lG++ty+ ek00029 540 TVPSDVVIFPSSDSQ-------------AHPPELLF-SASLPALGFSTYS 575 ikkvakteevnelpsakaeislsnelslsqpiekvssfvkkddevilser +++v++++++ ++p +++ +s+s+ +++ ek00029 576 VAQVPRWKPQARAPQPIPRRSWSPA-------------------LTI--- 603 rleNgylkvefdpdtGlltsiyDkengrevlaegagngvgnqfqlYedkP eN++++++fdpdtGll i++ +++ ++ v ++f++Y++ ek00029 604 --ENEHIRATFDPDTGLLMEIMNMNQQLLLP-------VRQTFFWYNA-- 642 lyWaDAWDidgdyeekplelqedsgaylfrpngplrasirvkrkfaveek gd+e + q+ sgay+frp +++++ +v+++ ek00029 643 --------SIGDNE----SDQA-SGAYIFRP-NQQKPL-------PVSRW 671 vplvvvdGelvqevhqsesswisqvirlyagstrlynqlldpriefeteV +++++v+++lvqevhq++s w+sqv+rly+g+ +++e+e+ V ek00029 672 AQIHLVKTPLVQEVHQNFSAWCSQVVRLYPGQ---------RHLELEWSV 712 dpwperekigkeLkvrFptdirsdkafYedqfGrverkRrrderlpthln +p+p+ + +gke++ rF t + +++ fY+d++Gr++ +Rrrd+r++++ln ek00029 713 GPIPVGDTWGKEVISRFDTPLETKGRFYTDSNGREILERRRDYRPTWKLN 762 vnetswegayyEvpahrfiddsekRkpgYGvslLndskyGgssSirelaq ++e+ ++g+yy+v+++++i d++++ +++L+d+++Ggss l+ ek00029 763 QTEP-VAGNYYPVNTRIYITDGNMQ-----LTVLTDRSQGGSS----LR- 801 dGqleLsLlRlsPtyPdpsaDAldGrhlfegLnenkctntyaLyphggsw dG+leL+ +R ++++D dGr++ e+L+en + + +++g++ ek00029 802 DGSLELMVHR------RLLKD--DGRGVSEPLMEN----GSGAWVRGRHL 839 vsagvvkeayasypSllrrlasqeLnaPllvffteegdesaigsgaalls v ++++++a+a++ r la+qe+ aP +v++ +g a+++ga++ + ek00029 840 VLLDTAQAAAAGH----RLLAEQEVLAPQVVLAPGGG--AAYNLGAPPRT 883 svsgleltpelplsvhlltlildaiKlAeDgeeleasdglvLrryeslge ++sgl + lp+svhlltl +++ +vL+r+e++++ ek00029 884 QFSGLRRD--LPPSVHLLTL-----------ASWG--PEMVLLRLEHQFA 918 rgeatlrtlsgpvasvtvnltnllErllavvslketsLtGnqel.kl.rl +ge++ r+ls p vt+nl++l++++ ++++l+et+L +nq ++ ++rl ek00029 919 VGEDSGRNLSAP---VTLNLRDLFSTF-TITRLQETTLVANQLReAAsRL 964 kwktk...............hPavGegkneeksrgevqdeevevtLkPfE kw+t++++++++++ + ++ + +tL+P+E ek00029 965 KWTTNtgptphqtpyqldpaN----------------------ITLEPME 992 IrTfr<-* IrTf+ ek00029 993 IRTFL 997 PF07748.3.ls: domain 1 of 1, from 506 to 997: score 568.7, E = 5.1e-168 *->epvvvfNpLawtrnevVripvsspnvsv.desgeiteailaeedsgk ++v+v+NpL++++n++Vr+pvs++++ v+d + g+ ek00029 506 FQVIVYNPLGRKVNWMVRLPVSEGVFVVkDPN-------------GR 539 pvesQivpvpsiveelrytaylgrsrtsttkyellFllaevPplGyatyk +v+s++v +ps + +++ ellF a++P+lG++ty+ ek00029 540 TVPSDVVIFPSSDSQ-------------AHPPELLF-SASLPALGFSTYS 575 ikkvakteevnelpsakaeislsnelslsqpiekvssfvkkddevilser +++v++++++ ++p +++ +s+s+ +++ ek00029 576 VAQVPRWKPQARAPQPIPRRSWSPA-------------------LTI--- 603 rleNgylkvefdpdtGlltsiyDkengrevlaegagngvgnqfqlYedkP eN++++++fdpdtGll i++ +++ ++ v ++f++Y++ ek00029 604 --ENEHIRATFDPDTGLLMEIMNMNQQLLLP-------VRQTFFWYNA-- 642 lyWaDAWDidgdyeekplelqedsgaylfrpngplrasirvkrkfaveek gd+e + q+ sgay+frp +++++ +v+++ ek00029 643 --------SIGDNE----SDQA-SGAYIFRP-NQQKPL-------PVSRW 671 vplvvvdGelvqevhqsesswisqvirlyagstrlynqlldpriefeteV +++++v+++lvqevhq++s w+sqv+rly+g+ +++e+e+ V ek00029 672 AQIHLVKTPLVQEVHQNFSAWCSQVVRLYPGQ---------RHLELEWSV 712 dpwperekigkeLkvrFptdirsdkafYedqfGrverkRrrderlpthln +p+p+ + +gke++ rF t + +++ fY+d++Gr++ +Rrrd+r++++ln ek00029 713 GPIPVGDTWGKEVISRFDTPLETKGRFYTDSNGREILERRRDYRPTWKLN 762 vnetswegayyEvpahrfiddsekRkpgYGvslLndskyGgssSirelaq ++e+ ++g+yy+v+++++i d++++ +++L+d+++Ggss l+ ek00029 763 QTEP-VAGNYYPVNTRIYITDGNMQ-----LTVLTDRSQGGSS----LR- 801 dGqleLsLlRlsPtyPdpsaDAldGrhlfegLnenkctntyaLyphggsw dG+leL+ +R ++++D dGr++ e+L+en + + +++g++ ek00029 802 DGSLELMVHR------RLLKD--DGRGVSEPLMEN----GSGAWVRGRHL 839 vsagvvkeayasypSllrrlasqeLnaPllvffteegdesaigsgaalls v ++++++a+a++ r la+qe+ aP +v++ +g a+++ga++ + ek00029 840 VLLDTAQAAAAGH----RLLAEQEVLAPQVVLAPGGG--AAYNLGAPPRT 883 svsgleltpelplsvhlltlildaiKlAeDgeeleasdglvLrryeslge ++sgl + lp+svhlltl +++ +vL+r+e++++ ek00029 884 QFSGLRRD--LPPSVHLLTL-----------ASWG--PEMVLLRLEHQFA 918 rgeatlrtlsgpvasvtvnltnllErllavvslketsLtGnqel.kl.rl +ge++ r+ls p vt+nl++l++++ ++++l+et+L +nq ++ ++rl ek00029 919 VGEDSGRNLSAP---VTLNLRDLFSTF-TITRLQETTLVANQLReAAsRL 964 kwktk...............hPavGegkneeksrgevqdeevevtLkPfE kw+t++++++++++ + ++ + +tL+P+E ek00029 965 KWTTNtgptphqtpyqldpaN----------------------ITLEPME 992 IrTfr<-* IrTf+ ek00029 993 IRTFL 997 //