hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-06452785/chunk_1/iprscan-20090618-06452785.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00030 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00004.19.fs ATPase family associated with various ce 660.5 2.6e-199 2 PF00004.19.ls ATPase family associated with various ce 664.3 9e-197 2 PF02359.8.fs Cell division protein 48 (CDC48), N-term 140.4 7.1e-41 1 PF02359.8.ls Cell division protein 48 (CDC48), N-term 142.4 1.1e-39 1 PF07728.4.fs ATPase family associated with various ce 43.0 2.6e-12 2 PF01078.11.fs Magnesium chelatase, subunit ChlI 36.1 1.2e-09 2 PF07726.2.fs ATPase family associated with various ce 30.7 5.5e-09 2 PF01057.8.fs Parvovirus non-structural protein NS1 27.2 4.3e-08 2 PF07724.4.fs ATPase family associated with various ce 22.7 4.1e-06 2 PF07728.4.ls ATPase family associated with various ce 17.2 8e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02359.8.fs 1/1 38 124 .. 1 88 [] 140.4 7.1e-41 PF02359.8.ls 1/1 38 124 .. 1 88 [] 142.4 1.1e-39 PF07724.4.fs 1/2 252 276 .. 1 32 [. 10.7 0.0099 PF07728.4.ls 1/1 256 387 .. 1 184 [] 17.2 8e-05 PF00004.19.fs 1/2 256 440 .. 1 215 [] 327.1 1.3e-98 PF00004.19.ls 1/2 256 440 .. 1 215 [] 329.0 7.6e-96 PF07726.2.fs 1/2 257 282 .. 1 27 [. 15.3 0.00023 PF07724.4.fs 2/2 525 549 .. 1 32 [. 12.0 0.0041 PF00004.19.fs 2/2 529 716 .. 1 215 [] 333.4 1.6e-100 PF00004.19.ls 2/2 529 716 .. 1 215 [] 335.3 9.8e-98 PF07726.2.fs 2/2 530 564 .. 1 38 [. 15.4 0.00021 PF01078.11.fs 2/2 530 547 .. 25 42 .. 19.9 3.7e-05 Alignments of top-scoring domains: PF02359.8.fs: domain 1 of 1, from 38 to 124: score 140.4, E = 7.1e-41 *->klrvleAdkcpddgrsiarldpvnmddLqlepGDvieieGkkGktfa ++++l++d+++++++s++ l++ +md+Lql++GD+++++Gkk +++a ek00030 38 RPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREA 83 fvirasdedigpGiIRidgvqRkNagvsiGDeVtVrpkadv<-* ++i++sd+++++++IR+++v+R+N++v++GD+++++p++dv ek00030 84 VCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDV 124 PF02359.8.ls: domain 1 of 1, from 38 to 124: score 142.4, E = 1.1e-39 *->klrvleAdkcpddgrsiarldpvnmddLqlepGDvieieGkkGktfa ++++l++d+++++++s++ l++ +md+Lql++GD+++++Gkk +++a ek00030 38 RPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREA 83 fvirasdedigpGiIRidgvqRkNagvsiGDeVtVrpkadv<-* ++i++sd+++++++IR+++v+R+N++v++GD+++++p++dv ek00030 84 VCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDV 124 PF07724.4.fs: domain 1 of 2, from 252 to 276: score 10.7, E = 0.0099 *->rpigsflflGPTGVGKTefdimppGLakaLAe<-* +p +l+ GP G+GKT+ a+a+A+ ek00030 252 KPPRGILLYGPPGTGKTL-------IARAVAN 276 PF07728.4.ls: domain 1 of 1, from 256 to 387: score 17.2, E = 8e-05 *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg g+lL GpPGtGK+++a+ +a + g+ +f + +++ ++ L g ek00030 256 GILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMS--KLAG 296 rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras + + L +A + e+ ++i+++DE++ + ek00030 297 ESE---------------SNLRKAFE-----EAEKNAPAIIFIDELDAIA 326 pevlnaLlslLderrlllpdggelvkvapydklaergreeldlwklgrli p + ++ ++ r+ + + +l++ ++++ ek00030 327 PK-REKTHGEVERRIVS--QLLTLMDGLK----QRAH------------- 356 hdfrliataNpldgprglnelsaALrr..RFlfvtvdpp<-* + ++a++N++ ++++ALrr +RF+ + + ek00030 357 --VIVMAATNRPN------SIDPALRRfgRFDREVDIGI 387 PF00004.19.fs: domain 1 of 2, from 256 to 440: score 327.1, E = 1.3e-98 *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv g+LLyGPPGtGKTl+A+avAne+ga f+ i+g+e++sk Gese+++ ek00030 256 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL 302 ralfelArkslkaaPspiiFIDEiDalapkRgd.egdvssrvvnqLltem r++fe+A+k+ aP iiFIDE+Da+apkR+ ++g+v++r+v+qLlt m ek00030 303 RKAFEEAEKN---APA-IIFIDELDAIAPKREKtHGEVERRIVSQLLTLM 348 DLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrrie D g+++ + +viv+aaTNrp+++DpAL+r GRfdr++ ek00030 349 D----GLKQ----------RAHVIVMAATNRPNSIDPALRRFGRFDREVD 384 vplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArrtpg ++ Pd+ +RleIl+ih+k+m+la +dvdl++ +A t+g ek00030 385 IGIPDATGRLEILQIHTKNMKLA---------DDVDLEQ----VANETHG 421 fsgadlaalcreAalralr<-* +gadlaalc eAal+a+r ek00030 422 HVGADLAALCSEAALQAIR 440 PF00004.19.ls: domain 1 of 2, from 256 to 440: score 329.0, E = 7.6e-96 *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv g+LLyGPPGtGKTl+A+avAne+ga f+ i+g+e++sk Gese+++ ek00030 256 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL 302 ralfelArkslkaaPspiiFIDEiDalapkRgd.egdvssrvvnqLltem r++fe+A+k+ aP iiFIDE+Da+apkR+ ++g+v++r+v+qLlt m ek00030 303 RKAFEEAEKN---APA-IIFIDELDAIAPKREKtHGEVERRIVSQLLTLM 348 DLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrrie D g+++ + +viv+aaTNrp+++DpAL+r GRfdr++ ek00030 349 D----GLKQ----------RAHVIVMAATNRPNSIDPALRRFGRFDREVD 384 vplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArrtpg ++ Pd+ +RleIl+ih+k+m+la +dvdl++ +A t+g ek00030 385 IGIPDATGRLEILQIHTKNMKLA---------DDVDLEQ----VANETHG 421 fsgadlaalcreAalralr<-* +gadlaalc eAal+a+r ek00030 422 HVGADLAALCSEAALQAIR 440 PF07726.2.fs: domain 1 of 2, from 257 to 282: score 15.3, E = 0.00023 *->HvLlegvPGlaKTllvkalAkaldlkf<-* +Ll g PG++KTl+++a+A+ ++ f ek00030 257 -ILLYGPPGTGKTLIARAVANETGAFF 282 PF07724.4.fs: domain 2 of 2, from 525 to 549: score 12.0, E = 0.0041 *->rpigsflflGPTGVGKTefdimppGLakaLAe<-* p +lf GP G+GKT+ Laka+A+ ek00030 525 TPSKGVLFYGPPGCGKTL-------LAKAIAN 549 PF00004.19.fs: domain 2 of 2, from 529 to 716: score 333.4, E = 1.6e-100 *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv gvL+yGPPG+GKTllAka+Ane++a+fisi+g+el+ +++Gese++v ek00030 529 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANV 575 ralfelArkslkaaPspiiFIDEiDalapkRgd....egdvssrvvnqLl r++f++Ar++ aP+ ++F+DE+D++a++Rg++ +++g++++rv+nq+l ek00030 576 REIFDKARQA---APC-VLFFDELDSIAKARGGnigdGGGAADRVINQIL 621 temDLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdr temD g++ ++v++i+aTNrpd++DpA+lrpGR+d+ ek00030 622 TEMD----GMST----------KKNVFIIGATNRPDIIDPAILRPGRLDQ 657 rievplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArr i++plPde++R+ Ilk l+k p+a kdvdl+ lA++ ek00030 658 LIYIPLPDEKSRVAILKANLRKSPVA---------KDVDLEF----LAKM 694 tpgfsgadlaalcreAalralr<-* t gfsgadl+ +c++A a+r ek00030 695 TNGFSGADLTEICQRACKLAIR 716 PF00004.19.ls: domain 2 of 2, from 529 to 716: score 335.3, E = 9.8e-98 *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv gvL+yGPPG+GKTllAka+Ane++a+fisi+g+el+ +++Gese++v ek00030 529 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANV 575 ralfelArkslkaaPspiiFIDEiDalapkRgd....egdvssrvvnqLl r++f++Ar++ aP+ ++F+DE+D++a++Rg++ +++g++++rv+nq+l ek00030 576 REIFDKARQA---APC-VLFFDELDSIAKARGGnigdGGGAADRVINQIL 621 temDLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdr temD g++ ++v++i+aTNrpd++DpA+lrpGR+d+ ek00030 622 TEMD----GMST----------KKNVFIIGATNRPDIIDPAILRPGRLDQ 657 rievplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArr i++plPde++R+ Ilk l+k p+a kdvdl+ lA++ ek00030 658 LIYIPLPDEKSRVAILKANLRKSPVA---------KDVDLEF----LAKM 694 tpgfsgadlaalcreAalralr<-* t gfsgadl+ +c++A a+r ek00030 695 TNGFSGADLTEICQRACKLAIR 716 PF07726.2.fs: domain 2 of 2, from 530 to 564: score 15.4, E = 0.00021 *->HvLlegvPGlaKTllvkalAkaldlkfkRiQaFTpDLl<-* vL g PG +KTll+ka+A+ +++f i p Ll ek00030 530 -VLFYGPPGCGKTLLAKAIANECQANFISIK--GPELL 564 PF01078.11.fs: domain 2 of 2, from 530 to 547: score 19.9, E = 3.7e-05 *->LLmiGPPGsGKtMLAkRL<-* +L++GPPG+GKt+LAk + ek00030 530 VLFYGPPGCGKTLLAKAI 547 //