hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-06452785/chunk_1/iprscan-20090618-06452785.nocrc
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Query sequence: ek00030
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                 191.3    9.1e-53   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/2     253   389 ..     1    92 []    93.0  3.6e-23
SM00382    2/2     526   665 ..     1    92 []    98.3  8.8e-25

Alignments of top-scoring domains:
SM00382: domain 1 of 2, from 253 to 389: score 93.0, E = 3.6e-23
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge.........gg
                      p++ +ll+GppG+GKT +ara+a++ g  +++i+g++  ++  ++++
     ek00030   253    PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPeimsklageSE 299  

                   qrirlalalark...dvlllDEitslld......................
                     +r+a++ a+k+ + ++++DE++++++++++ +++ +++  ++++ + +
     ek00030   300 SNLRKAFEEAEKnapAIIFIDELDAIAPkrekthgeverrivsqlltlmd 349  

                   .......vtviattn..dldpallrr..rfdrrivllril<-*
                   +++++ +v+v+a+tn++++++ +lrr +rfdr+++++ ++   
     ek00030   350 glkqrahVIVMAATNrpNSIDPALRRfgRFDREVDIGIPD    389  

SM00382: domain 2 of 2, from 526 to 665: score 98.3, E = 8.8e-25
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge.........gg
                      p + vl++GppG+GKT la+a+a++++  +i i g++      ++++
     ek00030   526    PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPelltmwfgeSE 572  

                   qrirlalalark...dvlllDEitslld......................
                   + +r ++++ar+  ++vl++DE++s+++ ++++ +++++  ++  ++ + 
     ek00030   573 ANVREIFDKARQaapCVLFFDELDSIAKarggnigdgggaadrvinqilt 622  

                   ..........vtviattn...dldpallrr.rfdrrivllril<-*
                   + ++ + +++v +i++tn+++++dpa+lr++r+d+ i++++++   
     ek00030   623 emdgmstkknVFIIGATNrpdIIDPAILRPgRLDQLIYIPLPD    665  

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