hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-06452785/chunk_1/iprscan-20090618-06452785.nocrc
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Query sequence: ek00030
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily      822.5   7.5e-245   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR01243   1/1      39   782 ..     1   980 []   822.5 7.5e-245

Alignments of top-scoring domains:
TIGR01243: domain 1 of 1, from 39 to 782: score 822.5, E = 7.5e-245
                   *->eveLrvaEAykrDvGRgivRiDrrtaeelGvepGDvveiekgerkvv
                        +L v EA + D    +v + +  ++el +  GD v ++ g+++  
     ek00030    39    PNRLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLK-GKKRRE 82   

                   AivyrsrpdDkGkgiiRmDGYlRknaGvaiGDrvtvkraekvkeAkKvvL
                   A+   +  d    + iRm   +R+n+ v +GD + ++    vk  k++ +
     ek00030    83 AVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 132  

                   AP...tqpirfgrdfedfvKeklLg..kpvskGekvvvsgrgdlyyssgt
                    P ++t ++  g+ fe ++K   L   +p+ kG++ +v            
     ek00030   133 LPiddTVEGITGNLFEVYLKPYFLEayRPIRKGDIFLVR----------- 171  

                   pfdevlegffeamsvgfgeLklvvvstiPagivrvteatevEvkekpvee
                          g       g+ ++++ vv+t P     v   t +    +p++ 
     ek00030   172 -------G-------GMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKR 207  

                   ekErlrkvPevtyEDiGgLkEavkkiREmvELPlkHPElFekLGiEPPKG
                   e E    + ev y+DiGg + +  +i+EmvELPl+HP lF+ +G+ PP+G
     ek00030   208 EDEE-ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 256  

                   vLLyGPPGtGKtLLAKAvAnEagAyFiainGPEimsKYyGEsEerLReiF
                   +LLyGPPGtGKtL+A+AvAnE gA+F+ inGPEimsK  GEsE +LR+ F
     ek00030   257 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 306  

                   kEAEEnAPsiiFiDEiDAiAPKReEvtGEvEkRvvaqLLtLmDGLKgRGk
                   +EAE nAP+iiFiDE+DAiAPKRe   GEvE+R+v+qLLtLmDGLK+R +
     ek00030   307 EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 356  

                   viviGAtnRPdAlDPALRRPGRFDREieigvPDkegRkEiLqiHtRnmPl
                   viv+ AtnRP+ +DPALRR GRFDRE+ ig+PD  gR EiLqiHt+nm l
     ek00030   357 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL 406  

                   aeDvdkdavikvlkdlekderfekekiekiiekvskansedeikeilked
                   a+Dvd                                             
     ek00030   407 ADDVD--------------------------------------------- 411  

                   gnvyvevrnrlidklLdkLAevtHGfvGADLAALakEAAmaaLRRlireG
                                  L+++A+ tHG+vGADLAAL+ EAA++a+R+ +   
     ek00030   412 ---------------LEQVANETHGHVGADLAALCSEAALQAIRKKMD-- 444  

                   kinlEAeeiPkevLeeLKvtmkDFkEAlKmvePsalREvlvEvPnvkWeD
                    i+lE e i +ev++ L vtm+DF  Al + +PsalRE +vEvP+v WeD
     ek00030   445 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWED 494  

                   iGGLEEvKqeLREAvEWPLKapevFeKlGirPPkGvLLfGPPGtGKtLLA
                   iGGLE+vK eL E v +P+ +p+ F K+G++P kGvL +GPPG GKtLLA
     ek00030   495 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 544  

                   KAvAtEsgAnFiavrGPEilsKWvGEsEkaiReiFrkARqaAPaiiFfDE
                   KA+A+E +AnFi+++GPE+l  W GEsE  +ReiF kARqaAP+++FfDE
     ek00030   545 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDE 594  

                   iDAiAPaRGasldek.gvtDrivnqlLtElDGleelsdvvviaAtnRPDi
                   +D iA aRG ++++ +g  Dr++nq+LtE+DG+  +++v +i+AtnRPDi
     ek00030   595 LDSIAKARGGNIGDGgGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 644  

                   lDPALLRPGRlDRlilvPaPDeeARleiFKiHtrsmpLaeDvdLeeLAkk
                   +DPA+LRPGRlD li++P PDe+ R+ i K   r+ p+a DvdLe LAk+
     ek00030   645 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 694  

                   tEGYtGADieAvvREAalaalRevvgkpwdievklrelinylqsisgtfr
                   t G+ GAD+  ++  A  +a+Re++                         
     ek00030   695 TNGFSGADLTEICQRACKLAIRESI------------------------- 719  

                   aaavelnsvikatkeresaeagefselknaigkiisvksvakEKlEaeek
                         +s i+  +er++  ++                      +E+ee+
     ek00030   720 ------ESEIRRERERQTNPSA----------------------MEVEED 741  

                   eidkflevinkeelkpsekdeaqklakylkdilgklkemidniyelenkl
                   +                                                 
     ek00030   742 DP------------------------------------------------ 743  

                   ntlkeqvsaeeideiikttqniiqrfttsldelknilkdiesirlkvslk
                                                                     
     ek00030     - -------------------------------------------------- -    

                   dlkvkkkhFleALkKvkPsvsKedmevYeklakelkrvt<-*
                      +++ hF+eA++  + svs +d+++Ye +a+ l++     
     ek00030   744 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSR    782  

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