hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-23095321/chunk_1/iprscan-20080808-23095321.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00083 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00365.10.fs Phosphofructokinase 919.6 0 4 PF00365.10.ls Phosphofructokinase 920.2 8e-274 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00365.10.fs 1/4 36 346 .. 1 312 [] 766.6 1e-265 PF00365.10.ls 1/2 36 346 .. 1 312 [] 768.7 3.4e-228 PF00365.10.ls 2/2 423 710 .. 1 312 [] 151.6 1.9e-42 PF00365.10.fs 2/4 433 492 .. 12 73 .. 53.9 6.1e-19 PF00365.10.fs 3/4 542 638 .. 142 241 .. 65.5 5.8e-23 PF00365.10.fs 4/4 673 710 .. 275 312 .] 33.5 7e-12 Alignments of top-scoring domains: PF00365.10.fs: domain 1 of 4, from 36 to 346: score 766.6, E = 1e-265 *->KkIgVLTSGGDApGMNAAiRAVVRsAiaeGleVygIyeGYaGLvaGG K+IgVLTSGGDA+GMNAA+RAVVR++i++G++Vy+IyeGY+G+v+GG ek00083 36 KAIGVLTSGGDAQGMNAAVRAVVRMGIYVGAKVYFIYEGYQGMVDGG 82 dnIkqlewesVsdiiqrGGTilgSARcpEFrerEGRlkAaenLkkhGIda +nI++++wesVs+i+q+GGTi+gSARc++Fr+rEGRlkAa+nL ++GI++ ek00083 83 SNIAEADWESVSSILQVGGTIIGSARCQAFRTREGRLKAACNLLQRGITN 132 LVVIGGDGSytGAdlLtsEhgsLleeLvkeGkiteeevakyqylnivGlp L+VIGGDGS+tGA+l+++E+++LleeL+++G+i++e+v+ky+yln+vG++ ek00083 133 LCVIGGDGSLTGANLFRKEWSGLLEELARNGQIDKEAVQKYAYLNVVGMV 182 GTIDNDisGTDyTIGfdTAlntiveaIDrIrdTAsSHqRtFVVEVMGRhC G+IDND++GTD+TIG+d+Al++i+e++D+I++TA+SHqRtFV+EVMGRhC ek00083 183 GSIDNDFCGTDMTIGTDSALHRIIEVVDAIMTTAQSHQRTFVLEVMGRHC 232 GdlALvaGiAgGADyIvIPEapApedfweeelanrlkrgrerGKrhnIvi G+lALv+++A+GAD+++ PE+p pe++wee+++ +l+++r+r+Kr+nI+i ek00083 233 GYLALVSALACGADWVFLPESP-PEEGWEEQMCVKLSENRARKKRLNIII 281 VAEgaidkqgkpitseavkklkvegLgldtRvTVLGHvQRGGtPtAfDRi VAEgaid+q+kpitse++k+l+v++Lg+dtRvT+LGHvQRGGtP+AfDRi ek00083 282 VAEGAIDTQNKPITSEKIKELVVTQLGYDTRVTILGHVQRGGTPSAFDRI 331 LASrmGaeAVeaLLe<-* LASrmG+eAV aLLe ek00083 332 LASRMGVEAVIALLE 346 PF00365.10.ls: domain 1 of 2, from 36 to 346: score 768.7, E = 3.4e-228 *->KkIgVLTSGGDApGMNAAiRAVVRsAiaeGleVygIyeGYaGLvaGG K+IgVLTSGGDA+GMNAA+RAVVR++i++G++Vy+IyeGY+G+v+GG ek00083 36 KAIGVLTSGGDAQGMNAAVRAVVRMGIYVGAKVYFIYEGYQGMVDGG 82 dnIkqlewesVsdiiqrGGTilgSARcpEFrerEGRlkAaenLkkhGIda +nI++++wesVs+i+q+GGTi+gSARc++Fr+rEGRlkAa+nL ++GI++ ek00083 83 SNIAEADWESVSSILQVGGTIIGSARCQAFRTREGRLKAACNLLQRGITN 132 LVVIGGDGSytGAdlLtsEhgsLleeLvkeGkiteeevakyqylnivGlp L+VIGGDGS+tGA+l+++E+++LleeL+++G+i++e+v+ky+yln+vG++ ek00083 133 LCVIGGDGSLTGANLFRKEWSGLLEELARNGQIDKEAVQKYAYLNVVGMV 182 GTIDNDisGTDyTIGfdTAlntiveaIDrIrdTAsSHqRtFVVEVMGRhC G+IDND++GTD+TIG+d+Al++i+e++D+I++TA+SHqRtFV+EVMGRhC ek00083 183 GSIDNDFCGTDMTIGTDSALHRIIEVVDAIMTTAQSHQRTFVLEVMGRHC 232 GdlALvaGiAgGADyIvIPEapApedfweeelanrlkrgrerGKrhnIvi G+lALv+++A+GAD+++ PE+p pe++wee+++ +l+++r+r+Kr+nI+i ek00083 233 GYLALVSALACGADWVFLPESP-PEEGWEEQMCVKLSENRARKKRLNIII 281 VAEgaidkqgkpitseavkklkvegLgldtRvTVLGHvQRGGtPtAfDRi VAEgaid+q+kpitse++k+l+v++Lg+dtRvT+LGHvQRGGtP+AfDRi ek00083 282 VAEGAIDTQNKPITSEKIKELVVTQLGYDTRVTILGHVQRGGTPSAFDRI 331 LASrmGaeAVeaLLe<-* LASrmG+eAV aLLe ek00083 332 LASRMGVEAVIALLE 346 PF00365.10.ls: domain 2 of 2, from 423 to 710: score 151.6, E = 1.9e-42 *->KkIgVLTSGGDApGMNAAiRAVVRsAiaeGleVygIyeGYaGLvaGG +V G A GMNAA+R+ VR++ia G + +Iy+G+ G +G ek00083 423 -NVAVINVGAPAAGMNAAVRSAVRVGIADGHRMLAIYDGFDGFAKG- 467 dnIkqlewesVsdiiqrGGTilgSAR.cpEFrerEGRlkAaenLkkhGId +Ik++ w +V+ + GG ilg+ R +p +E+ a + + h I ek00083 468 -QIKEIGWTDVGGWTGQGGSILGTKRvLPGKYLEEI----ATQMRTHSIN 512 aLVVIGGDGSytGAdlL...tsEhgsLleeLvkeGkiteeevakyqylni aL +IGG y G + L+ ++ h ee + ek00083 513 ALLIIGGFEAYLGLLELsaaREKH----EEFC---------------VPM 543 vGlpGTIDNDisGTDyTIGfdTAlntiveaIDrIrdTAs.SHqRtFVVEV v +p T N ++G+D+ IG+dTAlnti + DrI+ As+ R+F++E ek00083 544 VMVPATVSNNVPGSDFSIGADTALNTITDTCDRIKQSASgTKRRVFIIET 593 MGRhCGdlALvaGiAgGADyIvIPEapApedfweeelanrlkrgrerGKr MG +CG+lA + G+A+GAD+ I E+p f+ +l +++ e+ K ek00083 594 MGGYCGYLANMGGLAAGADAAYIFEEP----FDIRDLQSNVEHLTEKMKT 639 h...nIviVAEgaidkqgkpitseavkklkvegLgldtRvTVLGHvQRGG + ++ +v E + ++ ++ ++ + +d+R +VLGH+Q GG ek00083 640 TiqrGLVLRNESCSENYTTDFIYQLYSEEGKGV--FDCRKNVLGHMQQGG 687 tPtAfDRiLASrmGaeAVeaLLe<-* P++fDR +++ a+A e + + ek00083 688 APSPFDRNFGTKISARAMEWITA 710 PF00365.10.fs: domain 2 of 4, from 433 to 492: score 53.9, E = 6.1e-19 *->ApGMNAAiRAVVRsAiaeGleVygIyeGYaGLvaGGdnIkqlewesV A GMNAA+R+ VR++ia G + +Iy+G+ G +G +Ik++ w +V ek00083 433 AAGMNAAVRSAVRVGIADGHRMLAIYDGFDGFAKG--QIKEIGWTDV 477 sdiiqrGGTilgSAR<-* + + GG ilg+ R ek00083 478 GGWTGQGGSILGTKR 492 PF00365.10.fs: domain 3 of 4, from 542 to 638: score 65.5, E = 5.8e-23 *->nivGlpGTIDNDisGTDyTIGfdTAlntiveaIDrIrdTAs.SHqRt + v +p T N ++G+D+ IG+dTAlnti + DrI+ As+ R+ ek00083 542 PMVMVPATVSNNVPGSDFSIGADTALNTITDTCDRIKQSASgTKRRV 588 FVVEVMGRhCGdlALvaGiAgGADyIvIPEapApedfweeelanrlkrgr F++E MG +CG+lA + G+A+GAD+ I E+p f+ +l +++ ek00083 589 FIIETMGGYCGYLANMGGLAAGADAAYIFEEP----FDIRDLQSNVEHLT 634 erGK<-* e+ K ek00083 635 EKMK 638 PF00365.10.fs: domain 4 of 4, from 673 to 710: score 33.5, E = 7e-12 *->ldtRvTVLGHvQRGGtPtAfDRiLASrmGaeAVeaLLe<-* +d+R +VLGH+Q GG P++fDR +++ a+A e + + ek00083 673 FDCRKNVLGHMQQGGAPSPFDRNFGTKISARAMEWITA 710 //