hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-23155075/chunk_1/iprscan-20080808-23155075.nocrc
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Query sequence: ek00090
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01454.9.ls MAGE family                                    324.7    1.5e-94   1
PF01454.9.fs MAGE family                                    322.9    5.1e-94   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01454.9.fs   1/1     492   661 ..     1   219 []   322.9  5.1e-94
PF01454.9.ls   1/1     492   661 ..     1   219 []   324.7  1.5e-94

Alignments of top-scoring domains:
PF01454.9.fs: domain 1 of 1, from 492 to 661: score 322.9, E = 5.1e-94
                   *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel
                      LV++l++k++ K+ pI+r+e+l+++i+ey++ + peI++rA++ Le+
     ek00090   492    LVKYLMLKDYTKV-PIKRSEMLRDIIREYTDVY-PEIIERACFVLEK 536  

                   vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs
                    FG++LkE+d+                 h YIL+s+ + s          
     ek00090   537 KFGIQLKEIDKE---------------EHLYILISTPE-SL--------- 561  

                   sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE
                       g+ lg+++++P              k+GLL+viLgvIfmnGn+asE
     ek00090   562 ---AGI-LGTTKDTP--------------KLGLLLVILGVIFMNGNRASE 593  

                   eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP
                   ++Lwe L+++Gl++g +h+++G d+rkL+t ++VkqkYL  yr+vpns+P
     ek00090   594 AVLWEALRKMGLRPGVRHPLLG-DLRKLLTYEFVKQKYL-DYRRVPNSNP 641  

                   peyeFlWslGpRAyaEtskmkV<-*
                   peyeFlW  G R+y+EtskmkV   
     ek00090   642 PEYEFLW--GLRSYHETSKMKV    661  

PF01454.9.ls: domain 1 of 1, from 492 to 661: score 324.7, E = 1.5e-94
                   *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel
                      LV++l++k++ K+ pI+r+e+l+++i+ey++ + peI++rA++ Le+
     ek00090   492    LVKYLMLKDYTKV-PIKRSEMLRDIIREYTDVY-PEIIERACFVLEK 536  

                   vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs
                    FG++LkE+d+                 h YIL+s+ + s          
     ek00090   537 KFGIQLKEIDKE---------------EHLYILISTPE-SL--------- 561  

                   sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE
                       g+ lg+++++P              k+GLL+viLgvIfmnGn+asE
     ek00090   562 ---AGI-LGTTKDTP--------------KLGLLLVILGVIFMNGNRASE 593  

                   eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP
                   ++Lwe L+++Gl++g +h+++G d+rkL+t ++VkqkYL  yr+vpns+P
     ek00090   594 AVLWEALRKMGLRPGVRHPLLG-DLRKLLTYEFVKQKYL-DYRRVPNSNP 641  

                   peyeFlWslGpRAyaEtskmkV<-*
                   peyeFlW  G R+y+EtskmkV   
     ek00090   642 PEYEFLW--GLRSYHETSKMKV    661  

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